construct.high.res.reference: Systematic construction of a high-resolution reference

In morris-lab/Capybara: A tool to measure cell identity and fate transitions

Systematic construction of a high-resolution reference

Description

Create a pseudo-bulk reference by sampling 90-cells from each cell type to maintain cellular resolution while increasing transcriptional resolution

Usage

construct.high.res.reference(
  ref.mtx,
  coldata.df,
  criteria,
  cell.num.for.ref = 90
)

Arguments

ref.mtx	The single-cell reference dataset
coldata.df	The metadata (cell type information) for cells in the high-resolution reference
cell.num.for.ref	The number of cell numbers used to build the reference for each cell type. The default is cell.num.for.ref = 90

morris-lab/Capybara documentation built on June 13, 2022, 10:33 p.m.