perc.calc.aux: Emprical p-values for a query cell

In morris-lab/Capybara: A tool to measure cell identity and fate transitions

Emprical p-values for a query cell

Description

This function returns emprical p-values of all possilbe celltypes for a query cells under test.times resampled backgrounds.

Usage

perc.calc.aux(
  l,
  cell.names,
  mtx.ct.num,
  background.mtx,
  mtx,
  cnms,
  test.times = 50
)

Arguments

l	The index of the sample cell of query
cell.names	A vector of sample cells' names
mtx.ct.num	The number of all possible cell types
background.mtx	The matrix of identity score of reference cells. The row number is the total number of reference cells and the column number is the number of total number of possible cell types
mtx	The matrix of identity scores of query cells. The row number is the total number of query cells and the column number is the number of total number of possible cell types
cnms	The names of all possible cell types
test.times	The number of times resampling the background. The default is test.times=50

morris-lab/Capybara documentation built on June 13, 2022, 10:33 p.m.