Man pages for morris-lab/Capybara
A tool to measure cell identity and fate transitions
| binarization.mann.whitney | Binarization and Identity Calling from Identity Score |
| binary.to.classification | Generate classification results from the binarized result... |
| calc.scale.ratio | Scale Ratio Calculation |
| construct.high.res.reference | Systematic construction of a high-resolution reference |
| gene.intersect.sub | Find intersection genes |
| get.least.connected | Get the Least Connected Cells |
| get.mid.connected | Get the Medium Connected Cells |
| get.most.connected | Get the Most Connected Cells |
| multi.id.curate.qp | Multi-ID Score-Based Filter |
| normalize.dt | Normalization of Single-Cell RNA-Seq Data |
| perc.calc.aux | Emprical p-values for a query cell |
| percentage.calc | Emprical p-values for query cells |
| ref.construction | Reference Construction |
| sample.func | Empirical p-value of Identity Score Calculation |
| sc.quad.prog.run | Single-Cell Quadratic Programming Calculation |
| single.round.QP.analysis | Single Round of Quadratic Programming |
| top.genes | Top Variable Gene Identificaiton |
| transition.score | Transition Score Calculation |
