eQTLsRegStat: eQTLs of CREs statistics

In mortyran/NetLCP: Prioritizing combinations of regulatory elements in the heterogeneous network with variant ‘switches’ detection

eQTLs of CREs statistics

Description

eQTLs of CREs statistics

Usage

eQTLsRegStat(regData, eQTLsData, regulationType, topCREs, filterDegree, selectCREs)

Arguments

regData	the standard output of the function binaryRegulationExtract or multieleRegulation.
eQTLsData	the standard out of the function eQTLsDetection.
regulationType	a character representing the CREs type, it should be one of "circRNA-miRNA", "lncRNA-miRNA", "lncRNA-mRNA", "miRNA-mRNA", "miRNA-pathway", "mRNA-pathway", "circRNA-miRNA-mRNA", "lncRNA-miRNA-mRNA", "miRNA-mRNA-pathway", "lncRNA-miRNA-mRNA-pathway", "circRNA-miRNA-mRNA-pathway".
topCREs	an integer representing the number of the top prioritized CREs to exhibit.
filterDegree	an integer for filtering the nodes.
selectCREs	a vector of elements or CREs.

Value

eQTLs on CREs statistics with barplot.

Examples

 eQTLsRegStat(regData = NULL, eQTLsData = NULL, regulationType = "miRNA-mRNA", topCREs = 10, filterDegree = 40, selectCREs = NULL)

mortyran/NetLCP documentation built on Feb. 26, 2023, 11:33 a.m.