multieleRegulation: Multielements CREs in Local Heterogeneous Network

In mortyran/NetLCP: Prioritizing combinations of regulatory elements in the heterogeneous network with variant ‘switches’ detection

Multielements CREs in Local Heterogeneous Network

Description

Locate the multielements CREs in regional heterogeneous network which are experimentally verified.

Usage

multieleRegulation(elementList, regulationType, allRegulation)

Arguments

elementList	a vector consist of elements including circRNA, lncRNA, miRNA, mRNA or pathway IDs.
regulationType	character string naming the type of CREs including "circRNA-miRNA-mRNA", "lncRNA-miRNA-mRNA", "lncRNA-miRNA-pathway" and "circRNA-miRNA-pathway".
allRegulation	a logical value indicates exploring all related CREs from the storage or internal CREs between input elements.

Value

The dataframe of regulatory data with the colnames of Node1, Node2, Datasoure and RegulationType.

Examples

multieleRegulation(elementList = c("2309", "3838", "ENSG00000259366", "MIMAT0000255"), regulationType = "lncRNA-miRNA-mRNA",  allRegulation = FALSE)

mortyran/NetLCP documentation built on Feb. 26, 2023, 11:33 a.m.