Files in mrajeev08/treerabid
Reconstruct Rabies Transmission Trees
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/build_links.R
R/detection.R
R/parameterize.R
R/reconstruct.R
R/utils-data-table.R
R/viz_chains.R
README.Rmd
README.md
data-raw/DK_params.csv
data-raw/SI_params.csv
data-raw/params.R
data/params_treerabid.rda
inst/CITATION
man/add_uncertainty.Rd
man/assign_progen.Rd
man/boot_trees.Rd
man/build_all_links.Rd
man/build_consensus_links.Rd
man/build_consensus_tree.Rd
man/build_known_tree.Rd
man/build_tree.Rd
man/check_lineages.Rd
man/check_loops.Rd
man/dist_gamma1.Rd
man/dist_gamma2.Rd
man/dist_gamma_mixed.Rd
man/dist_lnorm1.Rd
man/dist_lnorm2.Rd
man/dist_lnorm_mixed.Rd
man/dist_weibull1.Rd
man/dist_weibull2.Rd
man/dist_weibull_mixed.Rd
man/figures/README-sim-1.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-6-2.png
man/find_lineages.Rd
man/find_lins_to_fix.Rd
man/find_loops_to_fix.Rd
man/fit_sims_pi.Rd
man/get_chain_membership.Rd
man/get_chain_persistence.Rd
man/get_chain_stats.Rd
man/get_edge_dt.Rd
man/get_gr.Rd
man/get_graph.Rd
man/get_membership.Rd
man/list_funs.Rd
man/select_progenitor.Rd
man/si_fun_lnorm.Rd
man/si_gamma1.Rd
man/si_gamma2.Rd
man/si_lnorm1.Rd
man/si_lnorm2.Rd
man/si_weibull1.Rd
man/si_weibull2.Rd
man/sim_generations.Rd
man/sim_times_pi.Rd
treerabid.Rproj
