sim_times_pi: Simulate times given generation function & pi, for validating...
In mrajeev08/treerabid: Reconstruct Rabies Transmission Trees
sim_times_pi R Documentation
Simulate times given generation function & pi, for validating detection estimation
Description
Simulate times given generation function & pi, for validating detection estimation
Usage
sim_times_pi(si_fun, nobs, params, alpha = 0.001, pi)
Arguments
si_fun
a function for the serial interval with arguments N (the number
to draw) and params (a list of parameters for the function), see si_fun_lnorm for
an example.
nobs
the number of observations to simulation
params
a list with parameters for the si_fun function to draw serial intervals
alpha
probability, the value at which to constrain kappa (i.e. to determine max_kappa
for sim_generations), i.e. the probability of observing this kappa for a given pi is < alpha
pi
detection probability (the proportion of cases which are detected)
Value
a vector of time differences between linked cases
mrajeev08/treerabid documentation built on Oct. 15, 2024, 12:14 p.m.
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| sim_times_pi | R Documentation |
Simulate times given generation function & pi, for validating detection estimation
Description
Simulate times given generation function & pi, for validating detection estimation
Usage
sim_times_pi(si_fun, nobs, params, alpha = 0.001, pi)
Arguments
si_fun |
a function for the serial interval with arguments N (the number to draw) and params (a list of parameters for the function), see si_fun_lnorm for an example. |
nobs |
the number of observations to simulation |
params |
a list with parameters for the si_fun function to draw serial intervals |
alpha |
probability, the value at which to constrain kappa (i.e. to determine max_kappa for sim_generations), i.e. the probability of observing this kappa for a given pi is < alpha |
pi |
detection probability (the proportion of cases which are detected) |
Value
a vector of time differences between linked cases
R Package Documentation
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