get_graph: Turn a transmssion tree into a graph object
In mrajeev08/treerabid: Reconstruct Rabies Transmission Trees
get_graph R Documentation
Turn a transmssion tree into a graph object
Description
Turn a transmssion tree into a graph object
Usage
get_graph(from, to, attrs)
Arguments
from
progenitor id's
to
case id's
attrs
data.table of vertex attributes where first column is the
vertex name (i.e. corresponding to unique case ids); if passing to
chain stats, this data.table should atleast have one additional column
named t which has the date of the case. Cannot have duplicate vertex names!
ttree
data.table with columns id_progen (id of case progenitor),
id_case (id of case), t (date of case), x_coord, and y_coord
Value
a graph generated by igraph
mrajeev08/treerabid documentation built on Oct. 15, 2024, 12:14 p.m.
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| get_graph | R Documentation |
Turn a transmssion tree into a graph object
Description
Turn a transmssion tree into a graph object
Usage
get_graph(from, to, attrs)
Arguments
from |
progenitor id's |
to |
case id's |
attrs |
data.table of vertex attributes where first column is the
vertex name (i.e. corresponding to unique case ids); if passing to
chain stats, this data.table should atleast have one additional column
named |
ttree |
data.table with columns |
Value
a graph generated by igraph
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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