build_known_tree: Reconstruct known tree (i.e. from tracing data)

In mrajeev08/treerabid: Reconstruct Rabies Transmission Trees

Reconstruct known tree (i.e. from tracing data)

Description

Reconstruct known tree (i.e. from tracing data)

Usage

build_known_tree(id_case, id_biter, y_coord, x_coord, owned, date_symptoms)

Arguments

id_case	id of case
id_biter	id of biter (i.e. known biter from contact tracing data, if unknown should be 0, if no contact tracing data, can pass NULL)
y_coord	y coordinate of case (should be in UTM: to do = use haversine distance for long/lat)
x_coord	x coordinate of case (should be in UTM: to do = use haversine distance for long/lat)
owned	whether animal is owned or not (per Katie, to account for uncertainty in case locations)
date_symptoms	case date (i.e. date symptoms started)

Value

a data.table with the known contact tracing tree

mrajeev08/treerabid documentation built on Oct. 15, 2024, 12:14 p.m.