mrc-ide/naomi
Naomi Model for Subnational HIV Estimates

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mrc-ide/naomi: Naomi Model for Subnational HIV Estimates
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API

API for mrc-ide/naomi
Naomi Model for Subnational HIV Estimates

Global functions
%>% Man page
.onLoad Source code
Imports Man page
`%||%` Source code
add_art_attendance_labels Source code
add_dec31_art Source code
add_output_labels Man page Source code
add_shiny90_unaware Source code
add_stats Source code
age_bar_plotly Man page Source code
age_quarter_to_age_group Source code
aggregate_anc Man page
aggregate_art Man page Source code
align_inputs_outputs Man page Source code
anc_programme_data_warning Man page Source code
anc_testing_artcov_mf Man page
anc_testing_clients_mf Man page
anc_testing_prev_mf Man page
art_programme_data_warning Man page Source code
artnum_mf Man page
assert_character Source code
assert_model_output_version Source code
assert_package_installed Source code
assert_pjnz_shiny90 Man page Source code
assert_scalar Source code
assert_scalar_character Source code
bar_plotly Man page Source code
build_agyw_tool_description Source code
build_comparison_report_description Source code
build_datapack_description Source code
build_datapack_metadata Source code
build_datapack_output Source code
build_description Source code
build_hierarchy_label Man page
build_hintr_output Source code
build_output_description Source code
build_summary_report_description Source code
bym2_conditional_lpdf Source code
cache_invariant Man page Source code
calculate_anc_art_coverage Source code
calculate_anc_prevalence Source code
calculate_prevalence_art_coverage Man page Source code
calendar_quarter_labels Man page Source code
calendar_quarter_labels_short Man page Source code
calendar_quarter_to_quarter Man page Source code
calendar_quarter_to_quarter_id Man page Source code
calendar_quarter_to_year Man page Source code
calibrate_outputs Man page Source code
cmc_date Man page Source code
convert_calendar_quarter Man page Source code
convert_format Source code
convert_quarter_id Man page Source code
create_Lproj Source code
create_adj_matrix Man page Source code
create_area_aggregation Man page Source code
create_areas Man page Source code
create_artattend_Amat Source code
create_edge_list Man page Source code
csv_reader Source code
cut_naomi_age_group Man page Source code
data_type_labels Man page Source code
datapack_aggregate_1to9 Source code
datapack_read_vmmc Source code
demo_anc_testing Man page
demo_area_boundaries Man page
demo_area_hierarchy Man page
demo_area_levels Man page
demo_art_number Man page
demo_population_agesex Man page
demo_survey_biomarker Man page
demo_survey_clusters Man page
demo_survey_hiv_indicators Man page
demo_survey_individuals Man page
demo_survey_meta Man page
demo_survey_regions Man page
disaggregate_0to4_outputs Man page Source code
district_barplot Man page Source code
do_validate_model_options Source code
drop_na_rows Source code
dropdown_buttons Man page Source code
extract_art_attendance Source code
extract_eppasm_pregprev Source code
extract_indicators Source code
extract_pjnz_naomi Man page Source code
extract_pjnz_one Source code
extract_pjnz_program_data Man page Source code
extract_shiny90_age_sex Man page Source code
fit_tmb Man page Source code
format_data_input Source code
format_options Source code
generate_comparison_report Man page Source code
generate_output_summary_report Man page Source code
get_age_group_out Man page
get_age_groups Man page Source code
get_aggregate_exprs Source code
get_anc_metadata Man page Source code
get_area_collection Man page Source code
get_art_metadata Man page Source code
get_colour_scale Man page Source code
get_five_year_age_groups Man page Source code
get_iso3 Source code
get_meta_indicator Man page Source code
get_metadata Man page
get_period_metadata Source code
get_pjnz_shiny90_filename Source code
get_plot_type_column_metadata Man page
get_plotting_metadata Man page Source code
get_spec_aggr_interpolation Man page Source code
get_spectrum_aggr_var Source code
get_strats_for_plot_type Source code
graduate_mono Source code
handle_naomi_warnings Source code
hintr_calibrate Man page Source code
hintr_calibrate_plot Man page Source code
hintr_comparison_plot Man page
hintr_prepare_agyw_download Man page Source code
hintr_prepare_coarse_age_group_download Man page Source code
hintr_prepare_comparison_report_download Man page Source code
hintr_prepare_datapack_download Man page Source code
hintr_prepare_spectrum_download Man page Source code
hintr_prepare_summary_report_download Man page Source code
hintr_run_model Man page Source code
hintr_save Source code
hintr_validate_anc_programme_data Man page Source code
hintr_validate_art_programme_data Man page Source code
interpolate_population_agesex Man page Source code
is_empty Source code
is_hintr_output Source code
is_naomi_output Source code
is_pjnz Source code
ldbinom Source code
log_lin_approx Source code
log_linear_interp Man page
make_tmb_obj Source code
map_outputs Man page Source code
match_value Source code
match_values Source code
naomi_info Source code
naomi_info_input Source code
naomi_info_packages Source code
naomi_init_traduire Source code
naomi_model_frame Man page
naomi_objective_function_r Man page Source code
naomi_output_frame Man page Source code
naomi_prepare_data Source code
naomi_read_csv Source code
naomi_translator_unregister Source code
naomi_warning Source code
naomi_write_csv Source code
new_progress Source code
new_simple_progress Source code
output_naomi_warning Man page Source code
output_package Man page Source code
pop_pyramid_outputs Man page Source code
prepare_anc_spectrum_comparison Man page Source code
prepare_art_spectrum_comparison Man page Source code
prepare_input_time_series_anc Man page
prepare_input_time_series_art Man page Source code
prepare_spectrum_naomi_comparison Man page Source code
prepare_tmb_inputs Man page Source code
print.naomi_areas Source code
qinv Source code
quarter_id_to_calendar_quarter Man page Source code
quarter_labels Man page Source code
quarter_number Man page Source code
quarter_year_labels Man page Source code
read_anc_testing Man page Source code
read_area_merged Man page Source code
read_art_number Man page Source code
read_csv_partial_cols Man page Source code
read_datapack_psnu Source code
read_dp Source code
read_dp_anc_testing Source code
read_dp_art_dec31 Source code
read_duckdb Source code
read_hintr_output Man page Source code
read_metadata Man page Source code
read_output_package Man page Source code
read_population Man page Source code
read_spectrum_projection_name Man page Source code
read_spectrum_region_code Man page Source code
read_spectrum_region_name Man page Source code
read_survey_indicators Man page Source code
readr_read_csv Source code
remove_art_attendance_labels Source code
remove_output_labels Source code
report_progress Source code
report_tmb Man page Source code
rmvnorm_sparseprec Source code
run_calibrate Source code
run_model Source code
sample_tmb Man page Source code
save_output Man page Source code
save_output_coarse_age_groups Source code
save_output_datapack Source code
save_output_package Man page Source code
save_output_spectrum Source code
scale_gmrf_precision Man page Source code
scatter_plotly Man page Source code
sdreport_joint_precision Man page
select_naomi_data Man page
solveSubset Source code
sparse_model_matrix Source code
spread_areas Man page Source code
squote Source code
subset_naomi_output Man page Source code
subset_output_package Man page Source code
suppress_conditions Source code
survey_mf Man page
system_file Source code
t_ Source code
tag_data_inputs Man page
th_map Man page Source code
transform_dmppt2 Source code
unroll_pjnz Source code
validate_calibrate_options Source code
validate_model_options Man page Source code
vlapply Source code
write_csv_string Source code
write_datapack_csv Man page Source code
write_navigator_checklist Man page Source code
year_labels Man page Source code
mrc-ide/naomi documentation built on Jan. 6, 2025, 10:20 a.m.

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