spim_plot_rt_dist: Plot Rt distribution

In mrc-ide/spimalot: Support for 'sircovid'

Plot Rt distribution

Description

Plot Rt distribution over time for various scenarios

Usage

spim_plot_rt_dist(
  npi_key,
  xlim,
  ylim,
  cols,
  labels = NULL,
  legend_ncol = 1,
  npi_key2 = NULL,
  multiplier = 1
)

Arguments

npi_key	data.frame type object with columns: nations, npi (scenario), Rt (mean), Rt_sd
xlim	Passed to plot
ylim	Passed to plot
cols	Colours for plots, should be same for npi_key2 if given
labels	Passed to legend legend parameter
legend_ncol	Passed to legend ncol parameter
npi_key2	Optional second npi_key that will be plotted with dashed lines
multiplier	Multiplier on the R values to plot - the distribution plotted will be that of multiplier * x where x is drawn from a lognormal with parameters specified in npi_key

mrc-ide/spimalot documentation built on Oct. 15, 2024, 12:15 p.m.