spim_simulate_prepare: Prepare for simulation
In mrc-ide/spimalot: Support for 'sircovid'

spim_simulate_prepare

R Documentation

Prepare for simulation

Description

Prepare combined output for simulations. This carries out maintenance for the state - upgrading state if sircovid has updated (within reason), sampling starting parameters, reducing to selected regions and (potentially) adding empty strain or booster compartments.

Usage

spim_simulate_prepare(
  combined,
  simulate_parameters,
  n_par,
  regions = NULL,
  seed_voc = FALSE
)

Arguments

`combined`	A "combined" object
`simulate_parameters`	A nested list of simulation parameters
`n_par`	The number of parameters to sample
`regions`	Character vector of regions to use
`seed_voc`	Logical, indicating if seeding a new VOC