Files in ms609/SlowQuartet
Comparison of Phylogenetic Trees Using Quartet and Bipartition Measures

.Rbuildignore
.covrignore
.gitattributes
.gitignore
.travis.yml
.zenodo.json
DESCRIPTION
NAMESPACE
NEWS.md
Quartet.Rproj
R/Metrics.R R/PartitionDistance.R R/QuartetDistance.R R/RcppExports.R R/ReleaseQuestions.R R/ResolvedQuartets.R R/TernaryPoints.R R/data.R R/tqDist.r README.md
_config.yml
cran-comments.md data-raw/sq_trees.R
data/sq_trees.rda
inst/CITATION
inst/Get_stuck_in.md
inst/REFERENCES.bib
inst/preamble.tex
man-roxygen/MRS.R man-roxygen/elementStatusParam.R man-roxygen/refTqDist.R man-roxygen/returnEstabrook.R man-roxygen/splitsParam.R man-roxygen/treeParam.R man-roxygen/treesCfParam.R man-roxygen/treesParam.R man/AllQuartets.Rd man/CompareQuartets.Rd man/CompareSplits.Rd man/Distances.Rd man/PairSharedQuartetStatus.Rd man/PairSharedSplitStatus.Rd man/PlotQuartet.Rd man/QuartetPoints.Rd man/QuartetState.Rd man/QuartetStatus.Rd man/ResolvedQuartets.Rd man/SimilarityMetrics.Rd man/SplitStatus.Rd man/StatusToMatrix.Rd man/SymmetricDifferenceLineEnds.Rd man/TQDist.Rd man/TQFile.Rd man/ValidateQuartetFile.Rd man/sq_trees.Rd man/tqdist_QuartetDistance.Rd
src/AbstractDistanceCalculator.cpp
src/AbstractDistanceCalculator.h
src/EdgeParser.cpp
src/HDT.cpp
src/HDTCountingCCToC.cpp
src/HDTCountingCTransform.cpp
src/HDTCountingG.cpp
src/HDTCountingIGToC.cpp
src/HDTCountingLeaf.cpp
src/HDTFactory.cpp
src/HDTListUtils.cpp
src/NewickParser.cpp
src/QuartetDistanceCalculator.cpp
src/QuartetDistanceCalculator.h
src/RcppExports.cpp
src/RootedTree.cpp
src/RootedTreeFactory.cpp
src/TripletDistanceCalculator.cpp
src/TripletDistanceCalculator.h
src/counting_linked_list.h
src/counting_linked_list_num_only.h
src/edge_parser.h
src/hdt.h
src/hdt_factory.h
src/int_stuff.cpp
src/int_stuff.h
src/memory_allocator.h
src/newick_parser.h
src/quartet_calc.h
src/rQuartetDist.cpp
src/rTripletDist.cpp
src/rooted_tree.h
src/rooted_tree_factory.h
src/templated_linked_list.h
src/triplet_calc.h
src/unrooted_tree.h
src/util.h
tests/figs/deps.txt
tests/figs/quartetdistance-r/plotquartet.svg
tests/testthat.R tests/testthat/test-1-tqdist.R tests/testthat/test-PartitionDistance.R tests/testthat/test-QuartetDistance.R tests/testthat/test-ResolvedQuartets.R tests/testthat/test-TernaryPoints.R tests/testthat/test-ZZZ-Metrics.R
tests/trees/all_quartets.new
tests/trees/five_trees.new
tests/trees/none.new
tests/trees/one_quartet_twice.new
tests/trees/quartet1.new
tests/trees/quartet2.new
tests/trees/quartet_unresolved.new
tests/trees/test_tree1.new
tests/trees/test_tree2.new
tests/trees/test_tree3.new
tests/trees/test_tree4.new
tests/trees/tree_ab-c.new
tests/trees/tree_ac-b.new
tests/trees/two_quartets.new
tests/trees/two_trees.new
tests/trees/unresolved1.new
tests/trees/unresolved2.new
tests/trees/unresolved_list.new
vignettes/Critical-distances.Rmd vignettes/Tree-distance-metric-evaluation.Rmd vignettes/Tree-distance-metrics.Rmd
ms609/SlowQuartet documentation built on Nov. 15, 2019, 12:55 p.m.