Junction: Junction

In mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes

Junction

Description

Junction object

Details

signed adjacency between two genomic loci

Methods

Public methods

• Junction$new()

• Junction$removeDups()

• Junction$gw()

• Junction$subset()

• Junction$set()

• Junction$print()

• Junction$clone()

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Method new()

Usage

Junction$new(grl = NULL, ...)

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Method removeDups()

Usage

Junction$removeDups()

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Method gw()

Usage

Junction$gw(pad = 0)

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Method subset()

Usage

Junction$subset(i)

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Method set()

Usage

Junction$set(...)

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Method print()

Usage

Junction$print()

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Method clone()

The objects of this class are cloneable with this method.

Usage

Junction$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

mskilab/gGnome documentation built on May 8, 2024, 4:25 p.m.