gr.in-shortcut: subset x on y ranges while ignoring strand (strand-agnostic)

In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

subset x on y ranges while ignoring strand (strand-agnostic)

Description

shortcut for x[gr.in(x,y)]

gr1

shortcut for x[gr.in(x,y)]

gr1

shortcut for x[gr.in(x,y)]

gr1

Shortcut for gr.in (standard arguments)

gr1

Shortcut for gr.in

gr1

Usage

## S4 method for signature 'GRanges'
x %&% y

## S4 method for signature 'GRangesList'
x %&% y

## S4 method for signature 'CompressedGRangesList'
x %&% y

x %^% ...

x %^^% ...

Arguments

x	See gr.in
...	See gr.in

Value

subset of gr1 that overlaps gr2

subset of gr1 that overlaps gr2

subset of gr1 that overlaps gr2

logical vector of length gr1 which is TRUE at entry i only if gr1[i] intersects at least one interval in gr2 (strand agnostic)

logical vector of length gr1 which is TRUE at entry i only if gr1[i] intersects at least one interval in gr2

Author(s)

Marcin Imielinski

Marcin Imielinski

Marcin Imielinski

Marcin Imielinski

mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.