grl.string: Create string representation of 'GRangesList'

In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

Create string representation of GRangesList

Description

Return UCSC style interval string corresponding to each GRanges in the GRangesList. One line per per GRangesList item. GRanges elements themselves are separated by sep

Usage

grl.string(grl, mb = FALSE, sep = ",", ...)

Arguments

grl	GRangesList to convert to string vector
mb	boolean Flag to return as MB and round to "round" (default = FALSE)
sep	Character to separate single GRanges ranges (default = ',')
...	Additional arguments to be passed to gr.string

Value

Character vector where each element is a GRanges pile corresponding to a single GRangesList element

Author(s)

Marcin Imielinski

Examples

grl.string(grl.hiC, mb=TRUE)

mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.