Files in mskilab/gUtils
R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/gUtils.R README.md cran-comments.md data-raw/prep_UCSC.R
data/grdata.rda
gUtils-manual.pdf
gUtils.Rproj
inst/extdata/dranger.txt
inst/extdata/gencode.v19.annotation.gtf.gr.rds
inst/extdata/hg19.broad.chrom.sizes
inst/extdata/hg19.chrom.sizes
inst/extdata/hg19.regularChr.chrom.sizes
inst/extdata/hg38.chrom.sizes
inst/extdata/human_g1k_v37.chrom.sizes
inst/extdata/human_g1k_v37.no.extra.chrom.sizes
inst/extdata/human_g1k_v37_decoy.chrom.sizes
inst/extdata/ind.rds
inst/extdata/refGene.hg19.gr.rds
inst/extdata/refGene.hg19.grl.rds
man/anchorlift.Rd man/dt2gr.Rd man/example_dnase.Rd man/example_genes.Rd man/gr.breaks.Rd man/gr.chr.Rd man/gr.collapse.Rd man/gr.dice.Rd man/gr.disjoin.Rd man/gr.dist.Rd man/gr.duplicated.Rd man/gr.end.Rd man/gr.findoverlaps.Rd man/gr.fix.Rd man/gr.flatten.Rd man/gr.flipstrand.Rd man/gr.in-shortcut.Rd man/gr.in-strand-shortcut.Rd man/gr.in.Rd man/gr.match.Rd man/gr.merge.Rd man/gr.mid.Rd man/gr.nochr.Rd man/gr.nudge-shortcut.Rd man/gr.nudge.Rd man/gr.pairflip.Rd man/gr.query.Rd man/gr.rand.Rd man/gr.sample.Rd man/gr.setdiff.Rd man/gr.simplify.Rd man/gr.start.Rd man/gr.string.Rd man/gr.stripstrand.Rd man/gr.sub.Rd man/gr.sum.Rd man/gr.tile.Rd man/gr.tile.map.Rd man/gr.trim.Rd man/gr.val-O.Rd man/gr.val-fractional.Rd man/gr.val-mean.Rd man/gr.val-numbers.Rd man/gr.val-shortcut.Rd man/gr.val-strand.Rd man/gr.val-total.Rd man/gr.val.Rd man/gr2dt.Rd man/grbind.Rd man/grfo-shortcut.Rd man/grfo.Rd man/grl.bind.Rd man/grl.eval.Rd man/grl.hiC.Rd man/grl.in.Rd man/grl.pivot.Rd man/grl.reduce.Rd man/grl.string.Rd man/grl.unlist.Rd man/grl1.Rd man/grl2.Rd man/hg_seqlengths.Rd man/parse.gr.Rd man/parse.grl.Rd man/ra.duplicated.Rd man/ra.overlaps.Rd man/rle.query.Rd man/rrbind.Rd man/seg2gr.Rd man/si.Rd man/si2gr.Rd man/standardize_segs.Rd man/streduce.Rd
notebooks/Demo1.ipynb
notebooks/Demo2.ipynb
notebooks/Demo3.ipynb
rtdocs/Makefile
rtdocs/conf.py
rtdocs/data.rst
rtdocs/figs.R
rtdocs/figures/COSMICplot.png
rtdocs/figures/flank.pdf
rtdocs/figures/flank.png
rtdocs/figures/flank_start.png
rtdocs/figures/gr.end.pdf
rtdocs/figures/gr.end.png
rtdocs/figures/gr.end_wstrand.png
rtdocs/figures/gr.flatten.png
rtdocs/figures/gr.flipstrand.png
rtdocs/figures/gr.mid.pdf
rtdocs/figures/gr.mid.png
rtdocs/figures/gr.rand.pdf
rtdocs/figures/gr.rand.png
rtdocs/figures/gr.refactor.pdf
rtdocs/figures/gr.refactor.png
rtdocs/figures/gr.sample.pdf
rtdocs/figures/gr.sample.png
rtdocs/figures/gr.simplify.pdf
rtdocs/figures/gr.simplify.png
rtdocs/figures/gr.start.pdf
rtdocs/figures/gr.start.png
rtdocs/figures/gr.start_wstrand.png
rtdocs/figures/gr.tile.pdf
rtdocs/figures/gr.tile.png
rtdocs/figures/shift.pdf
rtdocs/figures/shift.png
rtdocs/figures/streduce.pdf
rtdocs/figures/streduce.png
rtdocs/functions/functions.Rrst
rtdocs/functions/functions.rst
rtdocs/index.rst
rtdocs/introduction.rst
rtdocs/make.bat
rtdocs/rangeops.rst
rtdocs/rsam.rst
rtdocs/tutorial.rst
rtdocs/utils.rst
tests/testthat.R tests/testthat/test_rangeops.R
mskilab/gUtils documentation built on Sept. 1, 2018, 8:21 p.m.