Files in mskilab/gUtils
R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/gUtils.R README.md cran-comments.md data-raw/prep_UCSC.R
data/grdata.rda
gUtils.Rcheck/00_pkg_src/gUtils/DESCRIPTION
gUtils.Rcheck/00_pkg_src/gUtils/LICENSE
gUtils.Rcheck/00_pkg_src/gUtils/NAMESPACE
gUtils.Rcheck/00_pkg_src/gUtils/NEWS.md gUtils.Rcheck/00_pkg_src/gUtils/R/gUtils.R gUtils.Rcheck/00_pkg_src/gUtils/README.md
gUtils.Rcheck/00_pkg_src/gUtils/data/grdata.rda
gUtils.Rcheck/00_pkg_src/gUtils/gUtils_0.2.0.tar.gz
gUtils.Rcheck/00_pkg_src/gUtils/man/anchorlift.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/dt2gr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/example_dnase.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/example_genes.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.breaks.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.chr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.collapse.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.cov.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.dice.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.disjoin.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.dist.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.duplicated.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.end.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.findoverlaps.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.fix.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.flatten.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.flipstrand.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.in-shortcut.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.in-strand-shortcut.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.in.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.match.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.merge.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.mid.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.nochr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.nudge-shortcut.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.nudge.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.pairflip.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.query.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.rand.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.sample.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.setdiff.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.simplify.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.start.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.string.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.stripstrand.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.sub.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.tile.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.tile.map.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.trim.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-O.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-fractional.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-mean.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-numbers.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-shortcut.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-strand.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val-total.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr.val.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/gr2dt.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grbind.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grfo-shortcut.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grfo.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.eval.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.hiC.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.in.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.pivot.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.reduce.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.string.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.stripnames.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl.unlist.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl1.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grl2.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/grlbind.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/hg_seqlengths.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/parse.gr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/parse.grl.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/ra.dedup.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/ra.duplicated.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/ra.merge.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/ra.overlaps.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/rle.query.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/rrbind.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/seg2gr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/si.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/si2gr.Rd gUtils.Rcheck/00_pkg_src/gUtils/man/streduce.Rd gUtils.Rcheck/00_pkg_src/gUtils/tests/testthat.R gUtils.Rcheck/00_pkg_src/gUtils/tests/testthat/test_rangeops.R
gUtils.Rcheck/00check.log
gUtils.Rcheck/00install.out
gUtils.Rcheck/Rdlatex.log
gUtils.Rcheck/gUtils-Ex.R
gUtils.Rcheck/gUtils-Ex.Rout
gUtils.Rcheck/gUtils-Ex.pdf
gUtils.Rcheck/gUtils-manual.log
gUtils.Rcheck/gUtils-manual.pdf
gUtils.Rcheck/gUtils/DESCRIPTION
gUtils.Rcheck/gUtils/INDEX
gUtils.Rcheck/gUtils/LICENSE
gUtils.Rcheck/gUtils/Meta/Rd.rds
gUtils.Rcheck/gUtils/Meta/data.rds
gUtils.Rcheck/gUtils/Meta/hsearch.rds
gUtils.Rcheck/gUtils/Meta/links.rds
gUtils.Rcheck/gUtils/Meta/nsInfo.rds
gUtils.Rcheck/gUtils/Meta/package.rds
gUtils.Rcheck/gUtils/NAMESPACE
gUtils.Rcheck/gUtils/NEWS.md
gUtils.Rcheck/gUtils/R/gUtils
gUtils.Rcheck/gUtils/R/gUtils.rdb
gUtils.Rcheck/gUtils/R/gUtils.rdx
gUtils.Rcheck/gUtils/data/Rdata.rdb
gUtils.Rcheck/gUtils/data/Rdata.rds
gUtils.Rcheck/gUtils/data/Rdata.rdx
gUtils.Rcheck/gUtils/help/AnIndex
gUtils.Rcheck/gUtils/help/aliases.rds
gUtils.Rcheck/gUtils/help/gUtils.rdb
gUtils.Rcheck/gUtils/help/gUtils.rdx
gUtils.Rcheck/gUtils/help/paths.rds
gUtils.Rcheck/gUtils/html/00Index.html
gUtils.Rcheck/gUtils/html/R.css
gUtils.Rcheck/tests/startup.Rs
gUtils.Rcheck/tests/testthat.R
gUtils.Rcheck/tests/testthat.Rout
gUtils.Rcheck/tests/testthat/test_rangeops.R
gUtils.Rproj
gUtils.pdf
inst/extdata/dranger.txt
inst/extdata/gencode.v19.annotation.gtf.gr.rds
inst/extdata/hg19.regularChr.chrom.sizes
inst/extdata/human_g1k_v37.chrom.sizes
inst/extdata/ind.rds
inst/extdata/refGene.hg19.gr.rds
inst/extdata/refGene.hg19.grl.rds
man/anchorlift.Rd man/dt2gr.Rd man/example_dnase.Rd man/example_genes.Rd man/gr.breaks.Rd man/gr.chr.Rd man/gr.collapse.Rd man/gr.cov.Rd man/gr.dice.Rd man/gr.disjoin.Rd man/gr.dist.Rd man/gr.duplicated.Rd man/gr.end.Rd man/gr.findoverlaps.Rd man/gr.fix.Rd man/gr.flatten.Rd man/gr.flipstrand.Rd man/gr.in-shortcut.Rd man/gr.in-strand-shortcut.Rd man/gr.in.Rd man/gr.match.Rd man/gr.merge.Rd man/gr.mid.Rd man/gr.nochr.Rd man/gr.nudge-shortcut.Rd man/gr.nudge.Rd man/gr.pairflip.Rd man/gr.query.Rd man/gr.rand.Rd man/gr.sample.Rd man/gr.setdiff.Rd man/gr.simplify.Rd man/gr.start.Rd man/gr.string.Rd man/gr.stripstrand.Rd man/gr.sub.Rd man/gr.tile.Rd man/gr.tile.map.Rd man/gr.trim.Rd man/gr.val-O.Rd man/gr.val-fractional.Rd man/gr.val-mean.Rd man/gr.val-numbers.Rd man/gr.val-shortcut.Rd man/gr.val-strand.Rd man/gr.val-total.Rd man/gr.val.Rd man/gr2dt.Rd man/grbind.Rd man/grfo-shortcut.Rd man/grfo.Rd man/grl.eval.Rd man/grl.hiC.Rd man/grl.in.Rd man/grl.pivot.Rd man/grl.reduce.Rd man/grl.string.Rd man/grl.stripnames.Rd man/grl.unlist.Rd man/grl1.Rd man/grl2.Rd man/grlbind.Rd man/hg_seqlengths.Rd man/parse.gr.Rd man/parse.grl.Rd man/ra.dedup.Rd man/ra.duplicated.Rd man/ra.merge.Rd man/ra.overlaps.Rd man/rle.query.Rd man/rrbind.Rd man/seg2gr.Rd man/si.Rd man/si2gr.Rd man/streduce.Rd
rtdocs/Makefile
rtdocs/conf.py
rtdocs/data.rst
rtdocs/figs.R
rtdocs/figures/COSMICplot.png
rtdocs/figures/flank.pdf
rtdocs/figures/flank.png
rtdocs/figures/flank_start.png
rtdocs/figures/gr.end.pdf
rtdocs/figures/gr.end.png
rtdocs/figures/gr.end_wstrand.png
rtdocs/figures/gr.flatten.png
rtdocs/figures/gr.flipstrand.png
rtdocs/figures/gr.mid.pdf
rtdocs/figures/gr.mid.png
rtdocs/figures/gr.rand.pdf
rtdocs/figures/gr.rand.png
rtdocs/figures/gr.refactor.pdf
rtdocs/figures/gr.refactor.png
rtdocs/figures/gr.sample.pdf
rtdocs/figures/gr.sample.png
rtdocs/figures/gr.simplify.pdf
rtdocs/figures/gr.simplify.png
rtdocs/figures/gr.start.pdf
rtdocs/figures/gr.start.png
rtdocs/figures/gr.start_wstrand.png
rtdocs/figures/gr.tile.pdf
rtdocs/figures/gr.tile.png
rtdocs/figures/shift.pdf
rtdocs/figures/shift.png
rtdocs/figures/streduce.pdf
rtdocs/figures/streduce.png
rtdocs/functions/functions.Rrst
rtdocs/functions/functions.rst
rtdocs/index.rst
rtdocs/introduction.rst
rtdocs/make.bat
rtdocs/rangeops.rst
rtdocs/rsam.rst
rtdocs/tutorial.rst
rtdocs/utils.rst
tests/testthat.R tests/testthat/test_rangeops.R
mskilab/gUtils documentation built on Nov. 22, 2017, 9:38 p.m.