gr.simplify: Calculates pairwise distance for rearrangements represented...

In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

Calculates pairwise distance for rearrangements represented by GRangesList objects

Description

Calculates pairwise distance for rearrangements represented by GRangesList objects

Usage

gr.simplify(
  gr,
  field = NULL,
  val = NULL,
  include.val = TRUE,
  split = FALSE,
  pad = 1
)

Arguments

gr	GRanges or GRangesList input
field	character scalar, corresponding to value field of gr. (default = NULL)
val	character scalar (default = NULL)
include.val	boolean Flag will include in out gr values field of first matching record in input gr. (default = TRUE)
split	boolean Flag to split the output into GRangesList split by "field". (default = FALSE)
pad	integer Pad ranges by this amount before doing merge. [1], which merges contiguous but non-overlapping ranges (default = 1)

Value

Simplified GRanges with "field" populated with uniquely contiguous values

mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.