grl.start: Get the left ends of a 'GRangesList'

In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

Get the left ends of a GRangesList

Description

Function wrapping around gr.start to work on GRangesLists

Usage

grl.start(grl, width = 1, force = FALSE, ignore.strand = TRUE, clip = TRUE)

Arguments

grl	GRangesList object containing GRanges to operate on
width	integer Specify subranges of greater width including the start of the range. (default = 1)
force	boolean Allows returned GRangesList to have ranges outside of its Seqinfo bounds. (default = FALSE)
ignore.strand	boolean If set to FALSE, will extend '-' strands from the other direction (default = TRUE)
clip	boolean Trims returned GRangesList so that it does not extend beyond bounds of the input GRanges (default = TRUE)

Value

GRangesList object of width 1 ranges representing start of each genomic range in the input.

GRangesList object of width 1+ ranges representing start of each genomic range in the input.

mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.