gr.sub: Apply 'gsub' to seqlevels of a 'GRanges'
In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations
gr.sub R Documentation
Apply gsub to seqlevels of a GRanges
Description
Apply gsub to seqlevels of gr, by default removing 'chr', and "0.1" suffixes, and replacing "MT" with "M"
Usage
gr.sub(gr, a = c("^chr", "MT"), b = c("", "M"))
Arguments
gr
GRanges to switch out seqlevels for
a
vector of regular expressions of things to substitute out (default = c("^chr", "MT"))
b
vector of values to substitute in (default = c("", "M"))
Value
GRanges with substitutions
mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.
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| gr.sub | R Documentation |
Apply gsub to seqlevels of a GRanges
Description
Apply gsub to seqlevels of gr, by default removing 'chr', and "0.1" suffixes, and replacing "MT" with "M"
Usage
gr.sub(gr, a = c("^chr", "MT"), b = c("", "M"))
Arguments
gr |
|
a |
vector of regular expressions of things to substitute out (default = c("^chr", "MT")) |
b |
vector of values to substitute in (default = c("", "M")) |
Value
GRanges with substitutions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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