ra.duplicated: ra.duplicated

Description Usage Arguments Value Author(s)

View source: R/gUtils.R

Description

Show if junctions are Deduplicated

Determines overlaps between two or more piles of rearrangement junctions (as named or numbered arguments) +/- padding and will merge those that overlap into single junctions in the output, and then keep track for each output junction which of the input junctions it was "seen in" using logical flag meta data fields prefixed by "seen.by." and then the argument name (or "seen.by.ra" and the argument number)

Usage

1
ra.duplicated(grl, pad = 500, ignore.strand = FALSE)

Arguments

grl

GRangesList representing rearrangements to be merged

pad

non-negative integer specifying padding

ignore.strand

whether to ignore strand (implies all strand information will be ignored, use at your own risk)

Value

GRangesList of merged junctions with meta data fields specifying which of the inputs each outputted junction was "seen.by"

Author(s)

Xiaotong Yao


mskilab/gUtils documentation built on Sept. 1, 2018, 8:21 p.m.