ra.duplicated: ra.duplicated
In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations
ra.duplicated R Documentation
ra.duplicated
Description
Show if junctions are Deduplicated
Determines overlaps between two or more piles of rearrangement junctions (as named or numbered arguments) +/- padding
and will merge those that overlap into single junctions in the output, and then keep track for each output junction which
of the input junctions it was "seen in" using logical flag meta data fields prefixed by "seen.by." and then the argument name
(or "seen.by.ra" and the argument number)
Usage
ra.duplicated(grl, pad = 500, ignore.strand = FALSE)
Arguments
grl
GRangesList representing rearrangements to be merged
pad
non-negative integer specifying padding
ignore.strand
whether to ignore strand (implies all strand information will be ignored, use at your own risk)
Value
GRangesList of merged junctions with meta data fields specifying which of the inputs each outputted junction was "seen.by"
Author(s)
Xiaotong Yao
mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.
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| ra.duplicated | R Documentation |
ra.duplicated
Description
Show if junctions are Deduplicated
Determines overlaps between two or more piles of rearrangement junctions (as named or numbered arguments) +/- padding and will merge those that overlap into single junctions in the output, and then keep track for each output junction which of the input junctions it was "seen in" using logical flag meta data fields prefixed by "seen.by." and then the argument name (or "seen.by.ra" and the argument number)
Usage
ra.duplicated(grl, pad = 500, ignore.strand = FALSE)
Arguments
grl |
GRangesList representing rearrangements to be merged |
pad |
non-negative integer specifying padding |
ignore.strand |
whether to ignore strand (implies all strand information will be ignored, use at your own risk) |
Value
GRangesList of merged junctions with meta data fields specifying which of the inputs each outputted junction was "seen.by"
Author(s)
Xiaotong Yao
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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