gr.tile.map: gr.tile.map

In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations

gr.tile.map

Description

Given two tilings of the genome (e.g. at different resolution) query and subject outputs a length(query) list whose items are integer vectors of indices in subject overlapping that overlap that query (strand non-specific)

Usage

gr.tile.map(query, subject, verbose = FALSE)

Arguments

query	Query GRanges pile, perhaps created from some tile (e.g. gr.tile), and assumed to have no gaps
subject	Subject GRanges pile, perhaps created from some tile (e.g. gr.tile), and assumed to have no gaps
verbose	Increase the verbosity of the output (default = FALSE)

Value

list of length = length(query), where each element i is a vector of indicies in subject that overlaps element i of query

Note

Assumes that input query and subject have no gaps (including at end) or overlaps, i.e. ignores end() coordinates and only uses "starts"

Author(s)

Marcin Imielinski

mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.