parse.grl: parse.grl

Description Usage Arguments Value Author(s)

View source: R/gUtils.R

Description

Quick function to parse GRangesList from character vector IGV / UCSC style strings of format gr1;gr2;gr3 where each gr is of format chr:start-end[+/-]

Usage

1
parse.grl(x, seqlengths = hg_seqlengths())

Arguments

x

character vector representing a GRangesList with UCSC style coordinates (chr:start-end[+-]) representing a [signed] Granges and ";" separators within each item of x separating individaul each GRAnges

seqlengths

named integer vector representing genome (default = hg_seqlengths())

Value

GRangesList parsed from IGV-/UCSC-style strings

Author(s)

Marcin Imielinski


mskilab/gUtils documentation built on Sept. 1, 2018, 8:21 p.m.