parse.grl: parse.grl
In mskilab/gUtils: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations
parse.grl R Documentation
parse.grl
Description
Quick function to parse GRangesList from character vector IGV / UCSC style strings of format gr1;gr2;gr3 where each gr is of format chr:start-end[+/-]
Usage
parse.grl(x, seqlengths = hg_seqlengths(), meta = NULL)
Arguments
x
character vector representing a GRangesList with UCSC style coordinates (chr:start-end[+-]) representing a [signed] Granges and ";" separators within each item of x separating individaul each GRAnges
seqlengths
named integer vector representing genome (default = hg_seqlengths())
Value
GRangesList parsed from IGV-/UCSC-style strings
Author(s)
Marcin Imielinski
mskilab/gUtils documentation built on June 6, 2023, 12:08 a.m.
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| parse.grl | R Documentation |
parse.grl
Description
Quick function to parse GRangesList from character vector IGV / UCSC style strings of format gr1;gr2;gr3 where each gr is of format chr:start-end[+/-]
Usage
parse.grl(x, seqlengths = hg_seqlengths(), meta = NULL)
Arguments
x |
character vector representing a GRangesList with UCSC style coordinates (chr:start-end[+-]) representing a [signed] Granges and ";" separators within each item of x separating individaul each GRAnges |
seqlengths |
named integer vector representing genome (default = hg_seqlengths()) |
Value
GRangesList parsed from IGV-/UCSC-style strings
Author(s)
Marcin Imielinski
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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