msraredon/Connectome: Single Cell Connectomics

A toolkit to explore cell-cell connectivity patterns based on ligand and receptor data in heterogeneous single-cell datasets. Extends and generalizes the methods first explored in Raredon MSB et al (2019) <doi:10.1126/sciadv.aaw3851>. Preprint is available at https://www.biorxiv.org/content/10.1101/2021.01.21.427529v1. Peer-reviewed version is available at https://doi.org/10.1038/s41598-022-07959-x.

install.packages("remotes")
remotes::install_github("msraredon/Connectome")