DiffEdgeDotPlot: DiffEdgeDotPlot

In msraredon/Connectome: Single Cell Connectomics

DiffEdgeDotPlot

Description

Plotting function to make a DotPlot of differential edges for a network comparison. This function first finds all edges meeting the desired thresholding criteria, and then plots complete information regarding all mechanisms and celltype vectors implicated.

Usage

DiffEdgeDotPlot(
  differential.connectome,
  features = NULL,
  sources.include = NULL,
  targets.include = NULL,
  min.score = NULL,
  min.pct = NULL,
  verbose = T,
  infinity.to.max = T,
  ...
)

Arguments

differential.connectome	A differential connectome object
features	Gene of interest. Output will be limited to edges including these specific genes.
sources.include	Source nodes of interest. Output will be limited to edges coming from these sources.
targets.include	Target nodes of interest. Output will be limited to edges landing on these targets.
min.score	Default NULL. Will limit output to edges with a differential score greater than this value.
min.pct	Default NULL. Threshold to return clusterwise observations for both ligand and receptor. Only needs to be satisfied in connect.1 OR in connect.2.
verbose	Whether to output feedback to user
infinity.to.max	Default TRUE. If TRUE, will create a pseudo value to replace values of "Inf"

msraredon/Connectome documentation built on April 11, 2022, 9:16 a.m.