SignalScatter: SignalScatter

In msraredon/Connectome: Single Cell Connectomics

SignalScatter

Description

Scatter plot of signaling vectors involving features of interest. Returns a ggplot object, colored by mechanism, labeled by cell-cell vector.

Usage

SignalScatter(
  connectome,
  features,
  label.threshold = 1,
  weight.attribute = "weight_sc",
  ...
)

Arguments

connectome	A connectomic edgelist
features	Features of interest
label.threshold	Threshold for labeling of plot. Sum of receptor score and ligand score must be greater than this number.
weight.attribute	Column to use to define edgeweights for network analysis. 'weight_sc or weight_norm'. Defaults to 'weight_sc'
...	Arguments passed to FilterConnectome

msraredon/Connectome documentation built on April 11, 2022, 9:16 a.m.