CellCellScatter: CellCellScatter

In msraredon/Connectome: Single Cell Connectomics

CellCellScatter

Description

Scatter plot of a single cell-cell vector, involving features of interest. Returns a ggplot object, colored by mechanism. Points are labeled if above label.threshold on both x- and y-axes.

Usage

CellCellScatter(
  connectome,
  sources.include,
  targets.include,
  label.threshold = 1,
  weight.attribute = "weight_sc",
  ...
)

Arguments

connectome	A connectomic edgelist
sources.include	Source nodes of interest. Output will be limited to edges coming from these sources.
targets.include	Target nodes of interest. Output will be limited to edges landing on these targets.
label.threshold	Threshold for labeling of plot, applied to both x- and y- axes. Defaults to 1.
weight.attribute	Column to use to define edgeweights for network analysis. 'weight_sc or weight_norm'. Defaults to 'weight_sc'
...	Arguments passed to FilterConnectome

msraredon/Connectome documentation built on April 11, 2022, 9:16 a.m.