NetworkPlot: NetworkPlot

In msraredon/Connectome: Single Cell Connectomics

NetworkPlot

Description

Creates a network plot of a connectomic object. Wrapper for igraph functionality.

Usage

NetworkPlot(
  connectome,
  weight.attribute = "weight_sc",
  title = NULL,
  cols.use = NULL,
  include.all.nodes = F,
  min.z = NULL,
  mar = 1.5,
  layout = "circle",
  edge.label.cex = 0.4,
  ...
)

Arguments

connectome	A connectomic object, ideally filtered to only edges of interest.
weight.attribute	Column to use to define edgeweights for network analysis. 'weight_sc' or 'weight_norm'. Defaults to 'weight_sc'
title	Description of the network being plotted
cols.use	Optional. Colors for plotting nodes.
min.z	Minimum z-score for ligand and receptor.
mar	Default 1. Symmetric margin around plot.
...	Arguments passed to FilterConnectome

msraredon/Connectome documentation built on April 11, 2022, 9:16 a.m.