Files in muschellij2/drammsr
Installs DRAMMS (Deformable Registration via Attribute Matching and Mutual-Saliency Weighting) for Image Registration
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/download_dramms.R
R/dramms.R
R/dramms_cmd_maker.R
R/dramms_combine.R
R/dramms_convert.R
R/dramms_defop_coord.R
R/dramms_defop_invert.R
R/dramms_defop_operation.R
R/dramms_jacobian.R
R/dramms_no_affine.R
R/dramms_ravens.R
R/dramms_warp.R
R/dramms_with_ravens.R
R/drammsr.R
README.md
cleanup
drammsr.Rproj
inst/CITATION
man/download_dramms.Rd
man/dramms.Rd
man/dramms_cmd_maker.Rd
man/dramms_combine.Rd
man/dramms_convert.Rd
man/dramms_defop_coord.Rd
man/dramms_defop_invert.Rd
man/dramms_defop_operation.Rd
man/dramms_jacobian.Rd
man/dramms_no_affine.Rd
man/dramms_parse_args.Rd
man/dramms_ravens.Rd
man/dramms_warp.Rd
man/dramms_with_ravens.Rd
man/install_dramms.Rd
src/Makefile
src/dramms-build/AUTHORS.txt
src/dramms-build/BasisProject.cmake
src/dramms-build/CMakeLists.txt
src/dramms-build/COPYING.txt
src/dramms-build/CTestConfig.cmake
src/dramms-build/ChangeLog.txt
src/dramms-build/INSTALL.txt
src/dramms-build/README.txt
src/dramms-build/build/CMakeLists.txt
src/dramms-build/build/FastPD.patch
src/dramms-build/build/bundle/src/cmake-basis-3.2.0.tar.gz
src/dramms-build/config/Settings.cmake
src/dramms-build/doc/AllExamples.png
src/dramms-build/doc/CMakeLists.txt
src/dramms-build/doc/DRAMMS_Flyer.pdf
src/dramms-build/doc/DRAMMS_Flyer.tex
src/dramms-build/doc/Framework.jpg
src/dramms-build/doc/RoleOfConfidenceMap.jpg
src/dramms-build/doc/RoleOfOptimalAttributes.jpg
src/dramms-build/doc/about.rst
src/dramms-build/doc/changelog.rst
src/dramms-build/doc/cmake.png
src/dramms-build/doc/download.rst
src/dramms-build/doc/faq.rst
src/dramms-build/doc/fastpd.rst
src/dramms-build/doc/index.rst
src/dramms-build/doc/installation.rst
src/dramms-build/doc/manual.rst
src/dramms-build/doc/people.rst
src/dramms-build/doc/publications.rst
src/dramms-build/doc/references.bib
src/dramms-build/doc/static/brazil.jpg
src/dramms-build/doc/static/dramms.css
src/dramms-build/doc/static/email-icon.jpg
src/dramms-build/doc/static/france.jpg
src/dramms-build/doc/static/germany.jpg
src/dramms-build/doc/static/icon.gif
src/dramms-build/doc/static/logo.png
src/dramms-build/doc/tools/CalculateRAVENS.png
src/dramms-build/doc/tools/combine.rst
src/dramms-build/doc/tools/defop.rst
src/dramms-build/doc/tools/jacobian.rst
src/dramms-build/doc/tools/ravens.rst
src/dramms-build/doc/tools/warp.rst
src/dramms-build/doc/tutorials.rst
src/dramms-build/doc/tutorials/2DHistMR.rst
src/dramms-build/doc/tutorials/2DSimulated.rst
src/dramms-build/doc/tutorials/2a_2DSimulated.png
src/dramms-build/doc/tutorials/2b_3DMouseBrain_Histology2MRI.png
src/dramms-build/doc/tutorials/3a_3DHealthyBrain_SkullStripped.png
src/dramms-build/doc/tutorials/3b_3DHealthyBrain_RawImageWithSkull.png
src/dramms-build/doc/tutorials/3c_3DLesionedBrain_NormalizationToTemplate.png
src/dramms-build/doc/tutorials/3d_3DTumorBrain_RecurrenceNormalizationToTemplate.png
src/dramms-build/doc/tutorials/3d_3DTumorBrain_RecurrenceNormalizationToTemplate_cronal.png
src/dramms-build/doc/tutorials/3e_3DCardiac_CrossSubjectStripped.png
src/dramms-build/doc/tutorials/3g_3DCardiacLongitudinal.png
src/dramms-build/doc/tutorials/3g_3DCardiacMotion.jpg
src/dramms-build/doc/tutorials/3h_3DBreast_CancerGrowth.png
src/dramms-build/doc/tutorials/3j_3DProstate_Hisotology2MRI.png
src/dramms-build/doc/tutorials/3k_3DMouseBrain_MouseDevelopment.png
src/dramms-build/doc/tutorials/3l_3DPediatricBrain_BabyGrowth.png
src/dramms-build/doc/tutorials/BrainSkullStripped.rst
src/dramms-build/doc/tutorials/BrainWithLesion.rst
src/dramms-build/doc/tutorials/BrainWithSkull.rst
src/dramms-build/doc/tutorials/BrainWithTumorRecurrence.rst
src/dramms-build/doc/tutorials/BreastCancerChange_NonResponder.png
src/dramms-build/doc/tutorials/BreastLongitudinal.rst
src/dramms-build/doc/tutorials/CardiacCrossSubjects.rst
src/dramms-build/doc/tutorials/CardiacLongitudinal.rst
src/dramms-build/doc/tutorials/CardiacMotionMovie.gif
src/dramms-build/doc/tutorials/MouseBrainLongitudinal.rst
src/dramms-build/doc/tutorials/PediatricBrainLongitudinal.rst
src/dramms-build/doc/tutorials/ProstateHist2MRI.rst
src/dramms-build/doc/tutorials/intro2a_2DSimulated.png
src/dramms-build/doc/tutorials/intro2b_3DMouseBrain_Histology2MRI.png
src/dramms-build/doc/tutorials/intro3a_3DHealthyBrain_SkullStripped.png
src/dramms-build/doc/tutorials/intro3b_3DHealthyBrain_RawImageWithSkull.png
src/dramms-build/doc/tutorials/intro3c_3DLesionedBrain_NormalizationToTemplate.png
src/dramms-build/doc/tutorials/intro3d_3DTumorBrain_RecurrenceNormalizationToTemplate.png
src/dramms-build/doc/tutorials/intro3e_3DCardiac_CrossSubjectStripped.png
src/dramms-build/doc/tutorials/intro3g_3DCardiacLongitudinal.png
src/dramms-build/doc/tutorials/intro3h_3DBreast_CancerGrowth.png
src/dramms-build/doc/tutorials/intro3j_3DProstate_Hisotology2MRI.png
src/dramms-build/doc/tutorials/intro3k_3DMouseBrain_MouseDevelopment.png
src/dramms-build/doc/tutorials/intro3l_3DPediatricBrain_BabyGrowth.png
src/dramms-build/src/CMakeLists.txt
src/dramms-build/src/common/CMakeLists.txt
src/dramms-build/src/common/cres.cxx
src/dramms-build/src/common/cres.h
src/dramms-build/src/common/general.cxx
src/dramms-build/src/common/general.h
src/dramms-build/src/common/image.cxx
src/dramms-build/src/common/image.h
src/dramms-build/src/common/image.hxx
src/dramms-build/src/common/imageio.cxx
src/dramms-build/src/common/imageio.h
src/dramms-build/src/common/matrix.cxx
src/dramms-build/src/common/matrix.h
src/dramms-build/src/common/mvcd.cxx
src/dramms-build/src/common/mvcd.h
src/dramms-build/src/common/utilities.cxx
src/dramms-build/src/common/utilities.h
src/dramms-build/src/dramms.sh.in
src/dramms-build/src/tools/ApplyTransform.cxx
src/dramms-build/src/tools/CMakeLists.txt
src/dramms-build/src/tools/CalculateGaborTextures.cxx
src/dramms-build/src/tools/CalculateImageSimilarity.cxx
src/dramms-build/src/tools/CalculateJacobianMap.cxx
src/dramms-build/src/tools/CalculateRavensMaps.cxx
src/dramms-build/src/tools/CheckTwoImages.cxx
src/dramms-build/src/tools/CombineFeatureLists.cxx
src/dramms-build/src/tools/CombineTransforms.cxx
src/dramms-build/src/tools/ConvertDeformation.cxx
src/dramms-build/src/tools/ConvertImage.cxx
src/dramms-build/src/tools/Deform2D.cxx
src/dramms-build/src/tools/Deform3D.cxx
src/dramms-build/src/tools/DiscreteOptimizationUtilities.cxx
src/dramms-build/src/tools/DiscreteOptimizationUtilities.h
src/dramms-build/src/tools/GeneralUtilities.cxx
src/dramms-build/src/tools/GeneralUtilities.h
src/dramms-build/src/tools/GenerateGaborListFile.cxx
src/dramms-build/src/tools/GenerateImageListFile.cxx
src/dramms-build/src/tools/ImageOperation.cxx
src/dramms-build/src/tools/MatchHistograms.cxx
src/dramms-build/src/tools/TransformOperation.cxx
src/dramms-build/test/CMakeLists.txt
src/dramms-build/test/baseline/H08c_to_H09c_default_affine.nii.gz
src/dramms-build/test/baseline/H08c_to_H09c_default_noaffine.nii.gz
src/dramms-build/test/baseline/H08c_to_H09c_with_initdef.nii.gz
src/dramms-build/test/baseline/cardiac_T05_to_T01.hdr
src/dramms-build/test/baseline/cardiac_T05_to_T01.img
src/dramms-build/test/baseline/jac_H08c_to_H09c.nii.gz
src/dramms-build/test/baseline/jac_na01_RPI_to_002_RPI.nii.gz
src/dramms-build/test/baseline/na01_RPI_to_002_RPI.nii.gz
src/dramms-build/test/baseline/na01_RPI_to_002_RPI_nn.nii.gz
src/dramms-build/test/baseline/ravens_H08c_to_H09c_1.nii.gz
src/dramms-build/test/baseline/warped_H08c_to_H09c.nii.gz
src/dramms-build/test/input/002_ds_analyze.hdr
src/dramms-build/test/input/002_ds_analyze.img
src/dramms-build/test/input/H08c.nii.gz
src/dramms-build/test/input/H08c_tissueforravens.nii.gz
src/dramms-build/test/input/H09c.nii.gz
src/dramms-build/test/input/cardiacT01c.hdr
src/dramms-build/test/input/cardiacT01c.img
src/dramms-build/test/input/cardiacT05c.hdr
src/dramms-build/test/input/cardiacT05c.img
src/dramms-build/test/input/def_H08c_to_H09c_noaffine.nii.gz
src/dramms-build/test/input/na01_ds_analyze.hdr
src/dramms-build/test/input/na01_ds_analyze.img
