dramms_warp: Run DRAMMS Warping

In muschellij2/drammsr: Installs DRAMMS (Deformable Registration via Attribute Matching and Mutual-Saliency Weighting) for Image Registration

Description

Runs DRAMMS Warping on source and target

Usage

dramms_warp(
  source,
  def = NULL,
  outfile = NULL,
  interpolation = c("trilinear", "nearest.neighbor"),
  template = NULL,
  retimg = FALSE,
  verbose = TRUE
)

Arguments

source	Filename (or nifti) to match to target
def	input deformation field
outfile	Output filename
interpolation	Trilinear or nearest-neighbor interpolation for warping
template	Template used for argument -t if an affine transformed required
retimg	return nifti object versus output image
verbose	(logical) print out command before running

Value

If retimg = TRUE, a nifti object. If retimg = FALSE, a the filename of the output image.

Note

As DRAMMS use FLIRT to do affine transformations, please use flirt to apply transformation of affine .mat file.

muschellij2/drammsr documentation built on Jan. 18, 2021, 11:24 a.m.