dramms: Run DRAMMS

In muschellij2/drammsr: Installs DRAMMS (Deformable Registration via Attribute Matching and Mutual-Saliency Weighting) for Image Registration

Description

Runs DRAMMS on source and target

Usage

dramms(
  source,
  target,
  outfile = NULL,
  outdef = NULL,
  retimg = FALSE,
  opts = NULL,
  verbose = TRUE
)

Arguments

source	Filename (or nifti) to match to target
target	Filename (or nifti) to match source to to target
outfile	Output filename
outdef	output deformation field
retimg	return nifti object versus output image
opts	Extra arguments to pass to dramms
verbose	(logical) print out command before running

Value

If retimg = TRUE, a nifti object. If retimg = FALSE, a the filename of the output image.

Examples

## Not run: 
require(fslr)
temp = file.path(fsldir(), "data", "standard", "MNI152_T1_1mm.nii.gz")
# get file
#  https://github.com/muschellij2/FSLR_Data/raw/master/01-Baseline_T1.nii.gz
brain = file.path(fsldir(), "data", "standard", "MNI152_T1_1mm_brain.nii.gz")
res = dramms(source = brain, target = temp, retimg = TRUE)

## End(Not run)

muschellij2/drammsr documentation built on Jan. 18, 2021, 11:24 a.m.