dramms_convert: Run DRAMMS Conversion

In muschellij2/drammsr: Installs DRAMMS (Deformable Registration via Attribute Matching and Mutual-Saliency Weighting) for Image Registration

Description

Convert DRAMMS deformation to new output

Usage

dramms_convert(
  indef,
  outfile = NULL,
  retimg = FALSE,
  field_dim = NULL,
  field_pixdim = NULL,
  informat = c("DRAMMS", "ITK", "FSL"),
  outformat = c("DRAMMS", "ITK", "FSL"),
  outtype = c("field", "magnitude", "x", "y", "z"),
  change_3 = FALSE
)

Arguments

indef	input deformation field
outfile	output deformation field fielname
retimg	return nifti object versus output image
field_dim	Dimensions of input deformation field or nifti filename to get dimensions
field_pixdim	Pixel dimensions of input deformation field or nifti filename to get pixel dimensions
informat	format of input deformation field
outformat	format of output deformation field
outtype	type of output, either deformation field, magnitude of vectors, or x/y/z displacements
change_3	Change deformation field vectors to three-dimensional displacements

Value

If retimg = TRUE, a nifti object. If retimg = FALSE, a the filename of the output image.

muschellij2/drammsr documentation built on Jan. 18, 2021, 11:24 a.m.