dramms_jacobian: Calculate Jacobian Image

In muschellij2/drammsr: Installs DRAMMS (Deformable Registration via Attribute Matching and Mutual-Saliency Weighting) for Image Registration

Description

Runs DRAMMS-jacobian on deformation image to determine jacobian

Usage

dramms_jacobian(
  source,
  target,
  def,
  outfile = NULL,
  retimg = FALSE,
  smooth_def = FALSE,
  smooth_jacobian = FALSE,
  cut_jacobian = FALSE,
  xy_switch_off = FALSE,
  log_jacobian = FALSE
)

Arguments

source	Filename (or nifti) to match to target
target	Filename (or nifti) to match source to to target
def	input deformation field
outfile	Output deformation filename
retimg	return nifti object versus output image
smooth_def	smooth deformation field before calculating
smooth_jacobian	smooth calculated Jacobian map
cut_jacobian	cut-off Jacobian values at 0
xy_switch_off	turn x-y switch off (default: on for default input deformation in DRAMMS format)
log_jacobian	take log of jacobian determinant

Value

If retimg = TRUE, a nifti object. If retimg = FALSE, a the filename of the output image.

muschellij2/drammsr documentation built on Jan. 18, 2021, 11:24 a.m.