fslmerge: Merge images using FSL

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Merge images using FSL

Description

This function calls fslmerge to merge files on some dimension and either saves the image or returns an object of class nifti

Usage

fsl_merge(..., outfile = tempfile(fileext = ".nii.gz"), retimg = FALSE)

fslmerge(
  infiles,
  direction = c("x", "y", "z", "t", "a"),
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  verbose = TRUE,
  ...
)

Arguments

...	additional arguments passed to readnii.
outfile	(character) output filename
retimg	(logical) return image of class nifti
infiles	(character) input filenames
direction	(character) direction to merge over, x, y, z, t (time), a (auto)
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) pass to system
verbose	(logical) print out command before running

Value

character or logical depending on intern

Note

Functions with underscores have different defaults and will return an output filename, so to be used for piping

muschellij2/fslr documentation built on Aug. 31, 2022, 8:47 p.m.