fslrobustfov: FSL Robust Field of View

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

FSL Robust Field of View

Description

This function calls robustfov to automatically crop the image

Usage

fslrobustfov(
  file,
  brain_size = NULL,
  mat_name = NULL,
  roi_name = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  verbose = TRUE,
  ...
)

fsl_robustfov(retimg = FALSE, ...)

Arguments

file	(character) image to be manipulated
brain_size	size of brain in z-dimension (default 150mm)
mat_name	matrix output name
roi_name	ROI volume output name
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) to be passed to system
verbose	(logical) print out command before running
...	additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

muschellij2/fslr documentation built on Aug. 31, 2022, 8:47 p.m.