mid_sagittal_align: Mid-Sagittal Plane Alignment

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Mid-Sagittal Plane Alignment

Description

This function takes in an image, flips the image over the left/right plane, registers that flipped image to the original image, then applies the half transformation

Usage

mid_sagittal_align(
  file,
  outfile = NULL,
  retimg = TRUE,
  opts = "",
  translation = TRUE,
  force_rpi = TRUE,
  verbose = TRUE
)

Arguments

file	(character) input filename or class nifti
outfile	(character) output filename
retimg	(logical) return image of class nifti
opts	(character) options passed to flirt
translation	(logical) should the translation parameters be preserved (TRUE) or set to zero (FALSE)
force_rpi	Should rpi_orient_file be run?
verbose	(logical) print diagnostic messages

Value

Filename of output or nifti depending on retimg

muschellij2/fslr documentation built on May 10, 2024, 2:12 a.m.