View source: R/run_first_all.R
run_first_all | R Documentation |
Wrapper for run_first_all
from FSL for FIRST analysis
segmentation of subcortical structures
run_first_all( img, oprefix = tempfile(), brain_extracted = FALSE, structures = NULL, affine = NULL, opts = "", verbose = TRUE )
img |
specifies the input image (T1-weighted) |
oprefix |
specifies the output image basename (extensions will be added to this) |
brain_extracted |
specifies that the input image has been brain extracted |
structures |
a restricted set of structures to be segmented |
affine |
specifies the affine registration matrix to standard space (optional) |
opts |
(character) operations to be passed to |
verbose |
(logical) print out command before running |
List of results, including result of system
and some output files
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