Files in mzytnicki/srnadiff
Finding differentially expressed unannotated genomic regions from RNA-seq data
.Rbuildignore
.gitignore
CITATION
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/IR.R
R/RcppExports.R
R/helper.R
R/hmm.R
R/methods.R
R/naive.R
R/plotRegions.R
R/pvalues.R
R/readAnnot.R
R/srnadiff-package.R
R/srnadiff.R
R/zzz.R
inst/CITATION
inst/extdata/Homo_sapiens.GRCh38.76.gtf.gz
inst/extdata/SRR1634756.bam
inst/extdata/SRR1634757.bam
inst/extdata/SRR1634758.bam
inst/extdata/SRR1634759.bam
inst/extdata/SRR1634760.bam
inst/extdata/SRR1634761.bam
inst/extdata/dataInfo.csv
inst/extdata/header.sam
inst/extdata/mirbase21_GRCh38.gff3
inst/extdata/srnadiffExample.rda
man/annotReg.Rd
man/bamFiles.Rd
man/chromosomeSizes.Rd
man/countMatrix.Rd
man/coverages.Rd
man/normFactors.Rd
man/parameters.Rd
man/plotRegions.Rd
man/readAnnotation.Rd
man/regions.Rd
man/sampleInfo.Rd
man/srnadiff.Rd
man/srnadiffDefaultParameters.Rd
man/srnadiffExample.Rd
man/srnadiffExp.Rd
src/RcppExports.cpp
src/rcpp_hmm.cpp
src/rcpp_ir.cpp
src/rcpp_main.cpp
src/rcpp_utils.cpp
src/srnadiff_init.c
srnadiff.Rproj
tests/testthat.R
tests/testthat/test_AllClass.R
tests/testthat/test_IR.R
tests/testthat/test_annotation.R
tests/testthat/test_hmm.R
tests/testthat/test_plot.R
tests/testthat/test_pvalues.R
tests/testthat/test_srnadiff.R
vignettes/references.bib
vignettes/srnadiff.Rmd
