Man pages for mzytnicki/srnadiff
Finding differentially expressed unannotated genomic regions from RNA-seq data
| annotReg | Accessors for the 'annotReg' slot of an srnadiffExp object |
| bamFiles | Accessors for the 'bamFiles' slot of an srnadiffExp object |
| chromosomeSizes | Accessors for the 'chromosomeSizes' slot of an srnadiffExp... |
| countMatrix | Accessors for the 'countMatrix' slot of an srnadiffExp object |
| coverages | Accessors for the 'coverages' slot of an srnadiffExp object |
| normFactors | Accessors for the 'normFactors' slot of an srnadiffExp object |
| parameters | Accessors for the 'parameters' slot of an srnadiffExp object |
| plotRegions | Plot the coverage information surrounding genomic regions |
| readAnnotation | Reads and parses GFF/GTF files |
| regions | Extracts differentially expressed regions of an srnadiffExp... |
| sampleInfo | Accessors for the 'sampleInfo' slot of an srnadiffExp object |
| srnadiff | Finding differentially expressed unannotated genomic regions... |
| srnadiffDefaultParameters | List of srnadiff default parameters. |
| srnadiffExample | Example constructor |
| srnadiffExp | Infrastructure for sRNA-Seq experiment and differential... |
