Files in nationalparkservice/mojn-sv-rpackage
QC, Analysis, and Visualization of Spring Vegetation Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/disturbance-analysis.R
R/disturbance-figures.R
R/general-qc.R
R/lpi-qc.R
R/species-inv-qc.R
R/sysdata.rda
R/tree-count-qc.R
R/utils.R
R/vegetation-analysis.R
R/vegetation-figures.R
README.md
Temp/species-inv-analysis.R
man/BoxplotDisturbanceCover.Rd
man/BoxplotInvSpeciesRichness.Rd
man/BoxplotLPISpeciesRichness.Rd
man/BoxplotSpeciesByStratum.Rd
man/BoxplotSpeciesRichnessBySOP.Rd
man/BoxplotWaterPercentCover.Rd
man/CalculateSpeciesAccumulation.Rd
man/CanopyPercentCover.Rd
man/CloseDatabaseConnection.Rd
man/CountInvSpeciesDetected.Rd
man/CountLPISpeciesDetected.Rd
man/CountSpeciesByStratum.Rd
man/CountSpeciesDetected.Rd
man/DisturbancePercentCover.Rd
man/FacetTitle.Rd
man/FormatPlot.Rd
man/GetDataAvailability.Rd
man/GetDisturbanceTypes.Rd
man/GetRawData.Rd
man/GetSampleSizes.Rd
man/GetSpringName.Rd
man/HistogramCanopyPercentCover.Rd
man/LpiQcDuplicateSpecies.Rd
man/LpiQcMissingPoints.Rd
man/LpiQcTBDSpecies.Rd
man/LpiQcUNKSpecies.Rd
man/OpenDatabaseConnection.Rd
man/QcListNoData.Rd
man/QcReportDPL.Rd
man/QcUnknownSpeciesID.Rd
man/ReadAndFilterData.Rd
man/SaveDataToCsv.Rd
man/SpInvQcDuplicateSpecies.Rd
man/SpInvQcTBDSpecies.Rd
man/SpInvQcUNKSpecies.Rd
man/SpeciesAccumulationCurve.Rd
man/TableSpeciesPerTransect.Rd
man/TableTreePresenceAbsence.Rd
man/TreeCtQcDuplicateSpecies.Rd
man/TreeCtQcTBDSpecies.Rd
man/TreeCtQcUNKSpecies.Rd
man/TreePresenceAbsence.Rd
man/WaterPercentCover.Rd
tests/testthat.R
tests/testthat/dummy-data/bad/LPICanopy.csv
tests/testthat/dummy-data/bad/LPIDisturbance.csv
tests/testthat/dummy-data/bad/LPISoilSurface.csv
tests/testthat/dummy-data/bad/LPITransect.csv
tests/testthat/dummy-data/bad/Spring.csv
tests/testthat/dummy-data/bad/SpringVisit.csv
tests/testthat/dummy-data/bad/TreeCount.csv
tests/testthat/dummy-data/bad/TreeCountTransect.csv
tests/testthat/dummy-data/bad/VegetationInventory.csv
tests/testthat/dummy-data/bad/VegetationInventoryTransect.csv
tests/testthat/dummy-data/data-availability/LPITransect.csv
tests/testthat/dummy-data/data-availability/TreeCountTransect.csv
tests/testthat/dummy-data/data-availability/VegetationInventoryTransect.csv
tests/testthat/dummy-data/disturbance-analysis/LPIDisturbance.csv
tests/testthat/dummy-data/disturbance-figures/LPIDisturbance.csv
tests/testthat/dummy-data/disturbance-figures/Spring.csv
tests/testthat/dummy-data/general-qc/bad/LPICanopy.csv
tests/testthat/dummy-data/general-qc/bad/LPIDisturbance.csv
tests/testthat/dummy-data/general-qc/bad/LPISoilSurface.csv
tests/testthat/dummy-data/general-qc/bad/LPITransect.csv
tests/testthat/dummy-data/general-qc/bad/Spring.csv
tests/testthat/dummy-data/general-qc/bad/SpringVisit.csv
tests/testthat/dummy-data/general-qc/bad/TreeCount.csv
tests/testthat/dummy-data/general-qc/bad/TreeCountTransect.csv
tests/testthat/dummy-data/general-qc/bad/VegetationInventory.csv
tests/testthat/dummy-data/general-qc/bad/VegetationInventoryTransect.csv
tests/testthat/dummy-data/general-qc/ok/LPICanopy.csv
tests/testthat/dummy-data/general-qc/ok/LPIDisturbance.csv
tests/testthat/dummy-data/general-qc/ok/LPISoilSurface.csv
tests/testthat/dummy-data/general-qc/ok/LPITransect.csv
tests/testthat/dummy-data/general-qc/ok/Spring.csv
tests/testthat/dummy-data/general-qc/ok/SpringVisit.csv
tests/testthat/dummy-data/general-qc/ok/TreeCount.csv
tests/testthat/dummy-data/general-qc/ok/TreeCountTransect.csv
tests/testthat/dummy-data/general-qc/ok/VegetationInventory.csv
tests/testthat/dummy-data/general-qc/ok/VegetationInventoryTransect.csv
tests/testthat/dummy-data/lpi-qc/bad/LPICanopy.csv
tests/testthat/dummy-data/lpi-qc/bad/LPIDisturbance.csv
tests/testthat/dummy-data/lpi-qc/bad/LPISoilSurface.csv
tests/testthat/dummy-data/lpi-qc/bad/LPITransect.csv
tests/testthat/dummy-data/lpi-qc/bad/Spring.csv
tests/testthat/dummy-data/lpi-qc/bad/SpringVisit.csv
tests/testthat/dummy-data/lpi-qc/ok/LPICanopy.csv
tests/testthat/dummy-data/lpi-qc/ok/LPISoilSurface.csv
tests/testthat/dummy-data/ok/LPICanopy.csv
tests/testthat/dummy-data/ok/LPISoilSurface.csv
tests/testthat/dummy-data/ok/LPITransect.csv
tests/testthat/dummy-data/ok/Spring.csv
tests/testthat/dummy-data/ok/TreeCount.csv
tests/testthat/dummy-data/ok/TreeCountTransect.csv
tests/testthat/dummy-data/ok/VegetationInventory.csv
tests/testthat/dummy-data/ok/VegetationInventoryTransect.csv
tests/testthat/dummy-data/read-and-filter/LPICanopy.csv
tests/testthat/dummy-data/species-inv-qc/bad/VegetationInventory.csv
tests/testthat/dummy-data/species-inv-qc/ok/VegetationInventory.csv
tests/testthat/dummy-data/tree-ct-qc/bad/TreeCount.csv
tests/testthat/dummy-data/tree-ct-qc/ok/TreeCount.csv
tests/testthat/dummy-data/veg-analysis/LPICanopy.csv
tests/testthat/dummy-data/veg-analysis/TreeCount.csv
tests/testthat/dummy-data/veg-analysis/VegetationInventory.csv
tests/testthat/dummy-data/veg-analysis/water/LPICanopy.csv
tests/testthat/dummy-data/veg-figures/LPICanopy.csv
tests/testthat/dummy-data/veg-figures/Spring.csv
tests/testthat/dummy-data/veg-figures/TreeCount.csv
tests/testthat/dummy-data/veg-figures/VegetationInventory.csv
tests/testthat/dummy-data/veg-figures/water/LPICanopy.csv
tests/testthat/dummy-data/veg-figures/water/Spring.csv
tests/testthat/known-output/BoxplotDisturbanceCover-1.Rdata
tests/testthat/known-output/BoxplotDisturbanceCover-2.Rdata
tests/testthat/known-output/BoxplotInvSpeciesRichness-1.Rdata
tests/testthat/known-output/BoxplotInvSpeciesRichness-2.Rdata
tests/testthat/known-output/BoxplotLPISpeciesRichness-1.Rdata
tests/testthat/known-output/BoxplotLPISpeciesRichness-2.Rdata
tests/testthat/known-output/BoxplotSpeciesByStratum-1.Rdata
tests/testthat/known-output/BoxplotSpeciesByStratum-2.Rdata
tests/testthat/known-output/BoxplotSpeciesRichnessBySOP-1.Rdata
tests/testthat/known-output/BoxplotSpeciesRichnessBySOP-2.Rdata
tests/testthat/known-output/BoxplotWaterPercentCover-1.Rdata
tests/testthat/known-output/HistogramCanopyPercentCover-1.Rdata
tests/testthat/known-output/HistogramCanopyPercentCover-2.Rdata
tests/testthat/known-output/QcListNoData.Rdata
tests/testthat/known-output/QcReportDPL.Rdata
tests/testthat/known-output/SpeciesAccumulationCurve-1.Rdata
tests/testthat/known-output/TableSpeciesPerTransect-1.Rdata
tests/testthat/known-output/TableSpeciesPerTransect-2.Rdata
tests/testthat/known-output/TableTreePresenceAbsence-1.Rdata
tests/testthat/known-output/TableTreePresenceAbsence-2.Rdata
tests/testthat/test-csv-matches-database.R
tests/testthat/test-database-connection.R
tests/testthat/test-dist-figures.R
tests/testthat/test-disturbance-analysis.R
tests/testthat/test-general-qc.R
tests/testthat/test-lpi-qc.R
tests/testthat/test-species-inv-qc.R
tests/testthat/test-tree-count-qc.R
tests/testthat/test-utils.R
tests/testthat/test-veg-analysis.R
tests/testthat/test-veg-figures.R
tests/testthat/test-write-to-csv.R
