Files in natverse/hemibrainr
Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml.setaside

DESCRIPTION

Meta/vignette.rds

NAMESPACE

R/flytable.R R/flywire_googledrive.R R/flywire_matching.R R/flywire_synapses.R R/flywire_tracing.R R/hemibrain_adjacency.R R/hemibrain_annotations.R R/hemibrain_cable.R R/hemibrain_colours.R R/hemibrain_connectivity_similarity.R R/hemibrain_data.R R/hemibrain_fix_soma.R R/hemibrain_googledrive.R R/hemibrain_locality.R R/hemibrain_manual_split.R R/hemibrain_matching.R R/hemibrain_meshes.R R/hemibrain_meta.R R/hemibrain_neuron_meshes.R R/hemibrain_read_neurons.R R/hemibrain_reroot.R R/hemibrain_save_split.R R/hemibrain_split.R R/hemibrain_standardise.R R/hemibrain_synapses.R R/hemibrain_tags.R R/hemibrain_visualise.R R/hemibrainr-package.R R/hemibrainr_folders.R R/lineage_clones.R R/neuron_morphology.R R/neuron_side.R R/ngl-scenes.R R/quotes.R R/utilities-gdrive.R R/utilities-nblast.R R/utilities-rclone.R R/utilities.R R/zzz.R README.Rmd README.md

_pkgdown.yml

codecov.yml

data-raw/AL/mesh_sources.csv

data-raw/annotations/AL_gloms_RNs.csv

data-raw/annotations/bodyids_RNs.csv

data-raw/annotations/bodyids_lhns.csv

data-raw/annotations/bodyids_thirdorder.csv

data-raw/annotations/hartenstein_hemilineages_cbf_updated_1_2023.xlsx

data-raw/annotations/hemibrain_hemilineages_cbf.csv

data-raw/annotations/hemibrain_hemilineages_cbf.xlsx

data-raw/annotations/hemibrain_olfactory_layers.csv

data-raw/annotations/hemilineages_by_transmitter.csv

data-raw/annotations/mb_annotations.csv

data-raw/annotations/~$hemibrain_hemilineages_cbf.xlsx

data-raw/datasets.R

data-raw/flywire_metrics.csv

data-raw/hemibrain_all_neurons_metrics_polypre_centrifugal_distance.csv

data-raw/hemibrain_all_neurons_metrics_polypre_centrifugal_synapses.csv

data-raw/information.R data-raw/lineage_clones.R

data-raw/rubin_mandated.png

data/alln.ids.rda

data/alln.info.rda

data/apl.ids.rda

data/cent.ids.rda

data/cent.info.rda

data/dan.ids.rda

data/dn.ids.rda

data/dn.info.rda

data/flywire_al.surf.rda

data/fw.nt.cmat.rda

data/hb.nt.cmat.rda

data/hemibrain.surf.rda

data/hemibrain_al.surf.rda

data/hemibrain_al_microns.surf.rda

data/hemibrain_all_splitpoints.rda

data/hemibrain_glomeruli_summary.rda

data/hemibrain_hemilineages.rda

data/hemibrain_matched.rda

data/hemibrain_metrics.rda

data/hemibrain_metrics_polypre_centrifugal_distance.rda

data/hemibrain_metrics_polypre_centrifugal_synapses.rda

data/hemibrain_microns.surf.rda

data/hemibrain_olfactory_layers.rda

data/hemibrain_somas.rda

data/hemibrain_splitpoints_polypre_centrifugal_distance.rda

data/hemibrain_splitpoints_polypre_centrifugal_synapses.rda

data/hemibrain_splitpoints_pre_centrifugal_distance.rda

data/hrn.ids.rda

data/kc.ids.rda

data/kc.info.rda

data/lc.ids.rda

data/lc.info.rda

data/lhn.ids.rda

data/lm_matched.rda

data/mbon.ids.rda

data/mbon.info.rda

data/mpn.ids.rda

data/odour_scenes.rda

data/orn.ids.rda

data/paper_colours.rda

data/pn.ids.rda

data/pn.info.rda

data/rn.ids.rda

data/rn.info.rda

data/ton.ids.rda

data/ton.info.rda

data/upn.ids.rda

data/vppn.ids.rda

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docs/reference/hemibrain_read_neurons.html

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docs/reference/hemibrain_somas.html

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docs/reference/hemibrainr-package.html

docs/reference/hemibrainr_googledrive_data.html

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docs/reference/hemilineages.html

docs/reference/index.html

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docs/reference/matches_update.html

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docs/reference/plot_inspirobot.html

docs/reference/primary_neurite.html

docs/reference/prune_vertices.neuprintneuron.html

docs/reference/randomwords.html

docs/reference/reexports.html

docs/reference/standardise.html

hemibrainr.Rproj

inst/WORDLIST

inst/images/VUMa1.png

inst/images/alpn_cosine.png

inst/images/alpn_toon_heatmap.png

inst/images/birthday.png

inst/images/dm6.connectivity.matrix.png

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inst/images/dm6.skeletonisation.png

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inst/images/dm6.synapses.png

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inst/images/google_sheet.png

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inst/images/hemibrain.png

inst/images/hemibrain_glomeruli.png

inst/images/hemibrain_glomeruli_summary.png

inst/images/hemibrain_hemilineages.png

inst/images/hemibrain_meshrgl.png

inst/images/hemibrain_to_FAFB.png

inst/images/hemibrainr_googledrive.png

inst/images/hemilineage_example.png

inst/images/make_note.png

inst/images/match_quality.png

inst/images/medium_match_1.png

inst/images/medium_match_2.png

inst/images/medium_match_3.png

inst/images/medium_match_4.png

inst/images/neuron_split.png

inst/images/nlscan_split.png

inst/images/pipeline1.png

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inst/images/pipeline_console.png

inst/images/plot3d_split.png

inst/images/poor_match_1.png

inst/images/poor_match_2.png

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inst/images/predicted_synapses.png

inst/images/slick_matches.png

inst/images/split_validation.png

inst/images/ton_ids.png

inst/images/ton_info.png

inst/images/toon_cosine.png

inst/images/tracts.png

man/add_Label.Rd man/add_field.Rd man/class2ids.Rd man/classed.ids.Rd man/extract_cable.Rd man/fafb_hemibrain_annotate.Rd

man/figures/logo.svg

man/flow_centrality.Rd man/flycircuit_neurons.Rd man/flywire_annotations_for_synapses.Rd man/flywire_googledrive_data.Rd man/flywire_hemibrain_scene.Rd man/flywire_ids_update.Rd man/flywire_neurons.Rd man/flywire_synapse_simplify.Rd man/flywire_tracing_sheet.Rd man/geodesic_distance.Rd man/glomerulus.Rd man/grouped_adjacency.Rd man/hemibrain.surf.Rd man/hemibrain_add_made_matches.Rd man/hemibrain_adjust_saved_somas.Rd man/hemibrain_adjust_saved_split.Rd man/hemibrain_al.surf.Rd man/hemibrain_cbf.Rd man/hemibrain_clean_skeleton.Rd man/hemibrain_colours.Rd man/hemibrain_compartment_metrics.Rd man/hemibrain_connectivity_similarity.Rd man/hemibrain_cut.Rd man/hemibrain_download_neurons.Rd man/hemibrain_extract_connections.Rd man/hemibrain_flow_centrality.Rd man/hemibrain_get_meta.Rd man/hemibrain_matched.Rd man/hemibrain_matches.Rd man/hemibrain_matching.Rd man/hemibrain_metrics.Rd man/hemibrain_nblast.Rd man/hemibrain_neuron_meshes.Rd man/hemibrain_olfactory_layers.Rd man/hemibrain_overlap_locality.Rd man/hemibrain_precomputed_splitpoints.Rd man/hemibrain_read_neurons.Rd man/hemibrain_reroot.Rd man/hemibrain_roi_meshes.Rd man/hemibrain_skeleton_check.Rd man/hemibrain_somas.Rd man/hemibrain_splitpoints.Rd man/hemibrain_tags.Rd man/hemibrain_type_plot.Rd man/hemibrain_use_splitpoints.Rd man/hemibrain_view.Rd man/hemibrainr-package.Rd man/hemibrainr_googledrive_data.Rd man/hemibrainr_set_drive.Rd man/hemilineages.Rd man/info.Rd man/lineage_clones.Rd man/manually_assign_labels.Rd man/matches_update.Rd man/ngl_add_colours2.Rd man/nt.cmat.Rd man/paper_colours.Rd man/plot3d_split.Rd man/plot_inspirobot.Rd man/primary_neurite.Rd man/prune_vertices.neuprintneuron.Rd man/randomwords.Rd man/reexports.Rd man/remove_bad_synapses.Rd man/soma_side.Rd man/standardise.Rd

pkgdown/favicon/apple-touch-icon-120x120.png

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pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

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pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/spelling.R tests/testthat.R tests/testthat/test-adjacency.R tests/testthat/test-clean.R tests/testthat/test-meshes.R tests/testthat/test-read.R tests/testthat/test-reroot.R tests/testthat/test-split.R

vignettes/.gitignore

vignettes/flywire.Rmd vignettes/glomerulus_search.Rmd vignettes/google_filestream.Rmd vignettes/hemibrain_alpns_toons.Rmd vignettes/hemibrain_axons_dendrites.Rmd vignettes/hemibrain_connectivity.Rmd vignettes/match_making.Rmd vignettes/meta_data.Rmd vignettes/packages_guide.Rmd vignettes/transmitters.Rmd

natverse/hemibrainr documentation built on Nov. 27, 2024, 9:01 p.m.

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natverse/hemibrainr
Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

Files in natverse/hemibrainr
Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

R Package Documentation

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We want your feedback!

natverse/hemibrainr Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

Files in natverse/hemibrainr Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

R Package Documentation

Browse R Packages

We want your feedback!

natverse/hemibrainr
Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

Files in natverse/hemibrainr
Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``