flycircuit_neurons: Read flycircuit neurons from hemibrainr Google Drive

In natverse/hemibrainr: Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

Read flycircuit neurons from hemibrainr Google Drive

Description

Read flycircuit neurons from the hemibrainr google drive. The google drive must be mounted with Google Filestream or rclone. See hemibrainr_set_drive.

Usage

flycircuit_neurons(
  local = FALSE,
  folder = "light_level/flycircuit",
  cable = c("all", "primary.neurites", "arbour"),
  data = c("neuronlist", "nblast", "dps"),
  brainspace = c("JRCFIB2018F", "JRCFIB2018Fraw", "FCWB")
)

lm_lhns(
  local = FALSE,
  folder = "light_level/lhns",
  data = c("neuronlist", "nblast", "dps"),
  cable = c("lhns", "lhins", "lines"),
  brainspace = c("JRCFIB2018F", "JRCFIB2018Fraw", "FCWB")
)

Arguments

local	FALSE or path. By default (FALSE) data is read from options()$remote_connectome_data), but the user can specify an alternative path.
folder	A subfolder on the hemibrain team drive or your local data folder containing the data object to read.
cable	the type of cable we want to read. "all" indicates full neurons.
data	the type of data to read, i.e. neurons, an NBLAST matrix or a dotprops object.
brainspace	A template brain space for neurons loaded by lm_lhns. Defaults to JRCFIB2018F.

Value

a nat::neuronlistfh object for 'light-level' neurons in the given brainspace.

See Also

hemibrain_splitpoints, hemibrain_flow_centrality, hemibrain_metrics, hemibrainr_googledrive_data

Examples

## Not run: 

# All flycircuit neurons
fw = flycircuit_neurons()

# All LHNs from Frechter et al. 2019, eLife
lhns = lm_lhns()


## End(Not run)

natverse/hemibrainr documentation built on Nov. 27, 2024, 9:01 p.m.