hemibrain_overlap_locality: Calculate the overlap score between a neurons axon dendrite

In natverse/hemibrainr: Code for Working with Data from Janelia FlyEM's Hemibrain Project and the flywire data sets``

Calculate the overlap score between a neurons axon dendrite

Description

Calculates an overlap score using an overlap score between a neuron's axon and dendrite, if axon and dendrite have been marked out in the neuron object, e.g. by using flow_centrality.

Usage

hemibrain_overlap_locality(x, resample = 10, delta = 62.5, ...)

Arguments

x	a nat::neuronlist or nat::neuron object. It is assumed that this neuron has been read in by neuprintr::neuprint_read_neurons or possibly catmaid::read.neurons.catmaid.
resample	stepsize to which to resample neurons. If set to NULL, neurons are not resampled.
delta	the distance at which a synapse might occur
...	Additional arguments passed to methods or eventually to nat::nlapply

Value

a named vector of overlap_locality scores

See Also

hemibrain_compartment_metrics

natverse/hemibrainr documentation built on Nov. 27, 2024, 9:01 p.m.