Man pages for navinlabcode/CellTrek
Spatial Charting of Single Cell Transcriptomes in Tissues
| as_dummy_df | Title |
| build_delaunayn | Build Delaunay triangulation network |
| cc_gene_k | Consensus gene module selection |
| cc_wrapper | A wrapper function of ConensusClusterPlus with some default... |
| celltrek | The core function of CellTrek |
| celltrek_chart | Title |
| celltrek_dist | Calculate the RF-distance between sc and st |
| celltrek_from_dist | CellTrek from a pre-computed SC-ST distance matrix |
| celltrek_repel | Mannually repelling celltrek cells |
| celltrek_vis | Visualization of CellTrek results |
| cor_remove | Remove low correlation genes until reaching threshold |
| DT_boot_mst | Title |
| edge_odds | Title |
| euc_dist | Title |
| FindCorMarkers | Find highly correlated markers to target features |
| img_gs | Convert RGB image to gray scale image |
| KD_boot_mst | Title |
| kdist | Calculated K-distance between query cells and reference cells... |
| KL_ | Title |
| KL_boot_mst | Title |
| rbfk | Radial basis function kernel |
| run_kdist | Run K-distance with CellTrek(Seurat) object and add a... |
| scoexp | SCoexp module |
| scoloc | SColoc module |
| scoloc_vis | Visualization of SColoc results |
| sp_grid_kern_bin | Title |
| traint | Co-embedding ST and SC data using Seurat transfer anchors |
| wcor | Weighted cross correlation |
| wgcna_gene_k | Title |
| wgcna_wrapper | A wrapper function of WGCNA with wcor matrix as input |
