celltrek_chart: Title
In navinlabcode/CellTrek: Spatial Charting of Single Cell Transcriptomes in Tissues

celltrek_chart

R Documentation

Title

Title

celltrek_chart(
  dist_mat,
  coord_df,
  dist_cut = 500,
  top_spot = 10,
  spot_n = 10,
  repel_r = 5,
  repel_iter = 10
)

`dist_mat`	Distance matrix of sc-st (sc in rows and st in columns)
`coord_df`	Coordinates data frame of st (must contain coord_x, coord_y columns, barcode rownames)
`dist_cut`	Distance cutoff
`top_spot`	Maximum number of spots that one cell can be charted
`spot_n`	Maximum number of cells that one spot can contain
`repel_r`	Repelling radius
`repel_iter`	Repelling iterations