celltrek_vis: Visualization of CellTrek results
In navinlabcode/CellTrek: Spatial Charting of Single Cell Transcriptomes in Tissues
celltrek_vis R Documentation
Visualization of CellTrek results
Description
Visualization of CellTrek results
Usage
celltrek_vis(celltrek_df, img, scale_fac)
Arguments
celltrek_df
CellTrek output meta data, must contain coord_x and coord_y
img
Image data
scale_fac
Scale factor
Value
Shiny GUI
Examples
celltrek_vis(test_celltrek@meta.data, test_celltrek@images[[1]]@image, scale_fac=test_celltrek@images[[1]]@scale.factors$lowres)
navinlabcode/CellTrek documentation built on April 15, 2022, 8:04 a.m.
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| celltrek_vis | R Documentation |
Visualization of CellTrek results
Description
Visualization of CellTrek results
Usage
celltrek_vis(celltrek_df, img, scale_fac)
Arguments
celltrek_df |
CellTrek output meta data, must contain coord_x and coord_y |
img |
Image data |
scale_fac |
Scale factor |
Value
Shiny GUI
Examples
celltrek_vis(test_celltrek@meta.data, test_celltrek@images[[1]]@image, scale_fac=test_celltrek@images[[1]]@scale.factors$lowres)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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