scDensityPlot: scDensityPlot function

In ncrna/Yeskit: Yet Another Single-Cell Analysis Toolkit (Yeskit)

scDensityPlot function

Description

Visualize density plot in low dimensional embedding

Usage

scDensityPlot(
  object = NULL,
  reduction = NULL,
  title = NULL,
  split.by = NULL,
  ncol = NULL,
  colors = NULL,
  digits = NULL
)

Arguments

object	Seurat object
reduction	Dimensional reduction to use, default reduction='umap'
title	Figure title
split.by	Name of a meta.data column to split plot by
ncol	Number of columns for display the plots
colors	Vector of colours to use for n-colour gradient
digits	Integer representing the number of decimal places reserved for the legend, default digits=3

Value

A ggplot object

Examples

scDensityPlot(object = H3N2_small,
  reduction = "umap",
  split.by = "sample",
  ncol = 2
)

ncrna/Yeskit documentation built on Jan. 11, 2025, 8:39 a.m.