scPopulationPlot: scPopulationPlot

In ncrna/Yeskit: Yet Another Single-Cell Analysis Toolkit (Yeskit)

scPopulationPlot

Description

Population plot by clusters or samples

Usage

scPopulationPlot(
  object = NULL,
  by = c("sample", "cluster"),
  order = NULL,
  cols = NULL
)

Arguments

object	Seurat object
by	String used to separate cluster/sample, only 'cluster' or 'sample' is accepted
order	A vector to set the order of samples
cols	Vector of colors, each color corresponds to an identity class. Use ggplot2's default colors by default. We include a pallete called 'sc' which consists of 36 colors

Value

A dataframe that used to draw this plot

Examples

data("H3N2_small")
scPopulationPlot(object = H3N2_small,
  by = "sample",
  cols = NULL,
  order = c("Bystander", "Infected")
)

ncrna/Yeskit documentation built on Oct. 27, 2023, 2:13 a.m.