scGOBarPlot: scGOBarPlot visualization

In ncrna/Yeskit: Yet Another Single-Cell Analysis Toolkit (Yeskit)

scGOBarPlot visualization

Description

GO BarPlot visualization for each cluster

Usage

scGOBarPlot(
  object = NULL,
  key = NULL,
  cluster = NULL,
  direction = "up",
  ont = "BP",
  top_n = 20,
  extra = NULL
)

Arguments

object	Seurat object
key	The 'scGO' results that stored in object@misc$key
cluster	Cluster to presentation
direction	Regulation direction to use, only 'up' or 'down'
ont	Ontology to use, only 'BP', 'CC', or 'MF'
top_n	Only top_n entries to plot
extra	Extra slot used to fetch GOs

Value

A ggplot object

Examples

scGOBarPlot(object = H3N2_small,
  key = "Infected_vs_Bystander.GO",
  ont = "BP",
  top_n = 6,
  direction = "up",
  cluster = "0"
)

ncrna/Yeskit documentation built on Oct. 27, 2023, 2:13 a.m.