scDimPlot: scDimPlot

In ncrna/Yeskit: Yet Another Single-Cell Analysis Toolkit (Yeskit)

scDimPlot

Description

DimPlot with rasterized point for single-cell visualization

Usage

scDimPlot(
  object = NULL,
  cols = NULL,
  pt.size = NULL,
  reduction = NULL,
  split.by = NULL,
  label = TRUE,
  title = NULL,
  ncol = NULL,
  raster = TRUE
)

Arguments

object	Seurat object
cols	Colors to plot, use ggplot2's default colors by default. We include a pallete called 'sc' which consists of 36 colors
pt.size	Adjust point size to plot, default pt.size=0.5
reduction	Which dimensionality reduction to use
split.by	Name of a metadata column to split plot by
label	Whether to label the clusters
title	Title of the plot
ncol	Number of columns for display the plots
raster	Convert points to raster format, default is TRUE

Value

A ggplot object

References

Inspired by Stuart and Butler et al, Cell (2019)

See Also

DimPlot

Examples

data("H3N2_small")
scDimPlot(object = H3N2_small,
  reduction = "umap",
  cols = NULL,
  split.by = "sample",
  ncol = 2,
  pt.size = 1
)

ncrna/Yeskit documentation built on Nov. 4, 2024, 10:32 p.m.